View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5266_high_1_N (Length: 527)
Name: NF5266_high_1_N
Description: NF5266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5266_high_1_N |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 37704971 - 37704455
Alignment:
| Q |
11 |
gtgttatgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgtaagtgatacgnnnn |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37704971 |
gtgttacgaaaaatacttacataactaacttgttttttgagcaactacataactaacttgttataattaaataacttaaatgacgcaagtgatacgaaaa |
37704872 |
T |
|
| Q |
111 |
nnnnnnnnnnnnccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattcta |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704871 |
aatcttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattcta |
37704772 |
T |
|
| Q |
211 |
aatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704771 |
aatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttga |
37704672 |
T |
|
| Q |
311 |
aataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704671 |
aataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactg |
37704572 |
T |
|
| Q |
411 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704571 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa |
37704472 |
T |
|
| Q |
511 |
taagtcaacctttttgg |
527 |
Q |
| |
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||||||||||||||||| |
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| T |
37704471 |
taagtcaacctttttgg |
37704455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 164 - 527
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
| Q |
164 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac |
257 |
Q |
| |
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|||||||||||| ||| || ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
37699349 |
gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa |
37699250 |
T |
|
| Q |
258 |
attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g |
353 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
37699249 |
attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg |
37699150 |
T |
|
| Q |
354 |
gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga |
453 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37699149 |
gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga |
37699050 |
T |
|
| Q |
454 |
aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
527 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
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| T |
37699049 |
aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 224 - 527
Target Start/End: Complemental strand, 37437823 - 37437521
Alignment:
| Q |
224 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
321 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
419 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
420 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
519 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
520 |
ctttttgg |
527 |
Q |
| |
|
|||||||| |
|
|
| T |
37437528 |
ctttttgg |
37437521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 527
Target Start/End: Complemental strand, 37698864 - 37698637
Alignment:
| Q |
280 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
374 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
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|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
375 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
474 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
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|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
475 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
527 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg |
37698637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 30384298 - 30384256
Alignment:
| Q |
64 |
taacttgttataattaaataacttaaatgacgtaagtgatacg |
106 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| ||||| |
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|
| T |
30384298 |
taacttgttacaattaaataacttaaaagacgtaagtaatacg |
30384256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 1630012 - 1630048
Alignment:
| Q |
69 |
tgttataattaaataacttaaatgacgtaagtgatac |
105 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
1630012 |
tgttatgattaaataacttaaaagacgtaagtgatac |
1630048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 164 - 400
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
| Q |
164 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa |
253 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |
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|
| T |
16840857 |
gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa |
16840956 |
T |
|
| Q |
254 |
gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa |
347 |
Q |
| |
|
||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16840957 |
gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa |
16841055 |
T |
|
| Q |
348 |
agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
400 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841056 |
agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 31095132 - 31095092
Alignment:
| Q |
64 |
taacttgttataattaaataacttaaatgacgtaagtgata |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31095132 |
taacttgttataattaaataacttaaaggacgtaagtgata |
31095092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 17411131 - 17411089
Alignment:
| Q |
62 |
actaacttgttataattaaataacttaaatgacgtaagtgata |
104 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17411131 |
actaacttgttacaattaaataacttaaatgacgtaagtgata |
17411089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 196244 - 196287
Alignment:
| Q |
62 |
actaacttgttataattaaataacttaaatgacgtaagtgatac |
105 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
196244 |
actaaattattacaattaaataacttaaatgacgtaagtgatac |
196287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 18080645 - 18080600
Alignment:
| Q |
59 |
ataactaacttgttataattaaataacttaaatgacgtaagtgata |
104 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
18080645 |
ataactaacttattacaattaaataacttaaatgacgtaagtgata |
18080600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 44291420 - 44291463
Alignment:
| Q |
62 |
actaacttgttataattaaataacttaaatgacgtaagtgatac |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
44291420 |
actaacttgttacaattaaataacttaaaggacataagtgatac |
44291463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 12422352 - 12422390
Alignment:
| Q |
67 |
cttgttataattaaataacttaaatgacgtaagtgatac |
105 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
12422352 |
cttgttaaaattaaataacttaaaagacgtaagtgatac |
12422390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 32857837 - 32857805
Alignment:
| Q |
62 |
actaacttgttataattaaataacttaaatgac |
94 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
32857837 |
actaacttgttacaattaaataacttaaatgac |
32857805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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