View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5266_high_3 (Length: 359)
Name: NF5266_high_3
Description: NF5266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5266_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 5049288 - 5048939
Alignment:
| Q |
1 |
taaagattacaagataacaagcaatgatccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctg |
100 |
Q |
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| T |
5049288 |
taaagattacaagataacaagcaatgatccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctg |
5049189 |
T |
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| Q |
101 |
aaaaatgattcttcaaagtacaattctattaagggattctatgttggaaaaaagaacattagagctattgttctcatgtttggattgttgggttgtcttt |
200 |
Q |
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| T |
5049188 |
aaaaatgattcttcaaagtacaattctattaagggattctatgttggaaaaaagaacattagaactattgttctcatgtttggattgttgggttgtcttt |
5049089 |
T |
|
| Q |
201 |
tccttcttgattctattttcatctcttttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5049088 |
tccttcttgattctattttcatctcttttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcag |
5048989 |
T |
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| Q |
301 |
tattccatattattgtaagctataggtgcatatttcaagcagagtataat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5048988 |
tattccatattattgtaagctataggtgcatatttcaagcagagtataat |
5048939 |
T |
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