View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5266_high_6 (Length: 344)
Name: NF5266_high_6
Description: NF5266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5266_high_6 |
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| [»] scaffold2117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 9469725 - 9469866
Alignment:
| Q |
9 |
caccacagaaccaccatccctctttctctcacatcgaactcgccaaaaccagacaccatgttcgtcttcactacctcaccaaccaccctccaccgtctca |
108 |
Q |
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| T |
9469725 |
caccaccgaaccaccatccctctttctctcacatcgaactccccaaaaccagacaccatgttcgtcttcactgcctcaccaaccaccctcc----tctca |
9469820 |
T |
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| Q |
109 |
gccaccaacatcaaacccttcatcctcgtcaaactaacccttcgtc |
154 |
Q |
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| T |
9469821 |
gccaccaacatcaaacccttcatcctcgtcaaactaacccttcgtc |
9469866 |
T |
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Target: scaffold2117 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold2117
Description:
Target: scaffold2117; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 143 - 95
Alignment:
| Q |
17 |
aaccaccatccctctttctctcacatcgaactcgccaaaaccagacacc |
65 |
Q |
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| T |
143 |
aaccaccgtccctctttctctaacaccgaactcgccaaaaccagccacc |
95 |
T |
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