View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5266_low_1 (Length: 579)
Name: NF5266_low_1
Description: NF5266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5266_low_1 |
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| [»] scaffold0037 (3 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 570
Target Start/End: Complemental strand, 103826 - 103277
Alignment:
| Q |
15 |
tcaacatgtagtcatcaacaagctactaacagaagcagcagttcagctccaaattcttaatcataatttcctaagcaagacctcaagaggataaatttca |
114 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103826 |
tcaacatgtggtcatcaacaagctactaacagaagcagcagttcagctccaaattcttaatcataatttcctaagcaagacctcaagaggataaatttca |
103727 |
T |
|
| Q |
115 |
aatatgacattatggcaatacgatccgaagataattaacagattagaaagctataatatcataataaggtcaggacgaacagaaaaacattagcatacaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
103726 |
aatatgacattatggcaatacgatccgaagataattaacagattagaaagctataatatcataataaggtcaggacgaacagaaaaacattagcataaaa |
103627 |
T |
|
| Q |
215 |
tataagggatgtgataaagaaaaactaaagaaatacttcgatgaatgtacctgttttcctagagtgcggttcaatagcatacatataactaacactctcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
103626 |
tataagggatgtgataaagaaaaactaaagaaatacttcgatgaatgtacctgttttcctagagtgcggttcaatagcatacatataactatcactctcc |
103527 |
T |
|
| Q |
315 |
atggatcgtggaaatgttgctcttgaaggagagggaattcaaaaccagaaggtggaggcacccagttattatcaagtgttttccttttgtaagcctccct |
414 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103526 |
atggatcgtggaaatgatgctcttgaaggagagggaattcaaaaccagaaggtggaggcacccagttattatcaagtgttttccttttgtaagcctccct |
103427 |
T |
|
| Q |
415 |
gcatctatcagccttaagaaaaggtttagtttttctgttggatttcctagtcttttcaactttcggtctcggtctctttcgagagtctttgggaatctta |
514 |
Q |
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| T |
103426 |
gcatctatcagccttaagaaaaggtttagtttttcttttcgatttcctaggcttttcaactt------tcggcctctttcgagagtctttgggaatctta |
103333 |
T |
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| Q |
515 |
ggagcaagaggatatgaatctgttccttcatgttctctcttattaacaaactctct |
570 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||| |||||| ||||||| |
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| T |
103332 |
ggaggaagaggatatgaatccgttccttcatgttctctcttgttaacacactctct |
103277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 201 - 572
Target Start/End: Original strand, 31909 - 32283
Alignment:
| Q |
201 |
acattagcatacaatataagggatgtgataaagaaaaactaaagaaatacttcgatgaatgtacctgttttcctagagtgcggttcaatagcatacatat |
300 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
31909 |
acatcagcataaaatataagggatgcaataaagaaaaactaaagaaatactttgatgaatgtacctgttgacctttagtgcggttcagtagcatacatat |
32008 |
T |
|
| Q |
301 |
aactaacactctccatggatcgtggaaatgttgctcttgaaggagagggaattcaaaaccagaaggtg---------gaggcacccagttattatcaagt |
391 |
Q |
| |
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||| | ||| ||||||||||| |||||||| | ||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| |
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| T |
32009 |
aacaatcaccctccatggatcatggaaatgatcctcttgaaggagaggcttttcaacgagaggaggtgtagaacgtggaggcacccagttattatcaagt |
32108 |
T |
|
| Q |
392 |
gttttccttttgtaagcctccctgcatctatcagccttaagaaaaggtttagtttttctgttggatttcctagtcttttcaactttcggtctcggtctct |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |
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| T |
32109 |
gttttccttttgtaagcctccctgcatctatcagccttaagaaaaggtttagtttttcttttggatttcctaggcttttcaactt------tcggcctct |
32202 |
T |
|
| Q |
492 |
ttcgagagtctttgggaatcttaggagcaagaggatatgaatctgttccttcatgttctctcttattaacaaactctctga |
572 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
32203 |
ttcgagagtctttgggaatcttaggaggaagaggatatgaatccgttccttcatgttctctcttattaacacactctctga |
32283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 31654 - 31804
Alignment:
| Q |
15 |
tcaacatgtagtcatcaacaagctactaacagaagcagcagttcagctccaaattcttaatcataatttcctaagcaagacctcaagaggataaatttca |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31654 |
tcaacatgtagtcatcaacaagcttctaacagaatcagcagttcagcatcaaattcttaatcataatttcctaagcaagacctcaagaagataaatttca |
31753 |
T |
|
| Q |
115 |
aatatgacattatggcaatacgatccgaagataattaacagattagaaagc |
165 |
Q |
| |
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||||||||||||| ||||| ||||||||| | ||||||| ||||||||| |
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| T |
31754 |
aatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
31804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 213 - 534
Target Start/End: Complemental strand, 7892095 - 7891772
Alignment:
| Q |
213 |
aatataagggatgtgataaagaaaaactaaagaaatacttcgatgaatgtacctgttttcctagagtgcggttcaatagcatacatataactaacactct |
312 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| || |
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|
| T |
7892095 |
aatataagggatgcaataaagaaaaactaaggaaatacttcgatgaatgtaccttaacacctttagtgcggttcaatagcatacatataacagtcaccct |
7891996 |
T |
|
| Q |
313 |
ccatggatcgtggaaatgttgctcttgaaggagagggaattcaaa------acc---agaaggtggaggcacccagttattatcaagtgttttccttttg |
403 |
Q |
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||||||||| || ||||| | ||||| ||| ||||| ||||| || |||| ||||| |||||| |||||||| | |||||||||||| |
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| T |
7891995 |
ccatggatcatgtaaatgatactcttaaagaagaggctcttcaaggataggacgtgtagaacgtggattcacccaattattatccggcgttttccttttg |
7891896 |
T |
|
| Q |
404 |
taagcctccctgcatctatcagccttaagaaaaggtttagtttttctgttggatttcctagtcttttcaactttcggtctcggtctctttcgagagtctt |
503 |
Q |
| |
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||||||||||| |||||||||||||| | |||||||||||||||||| | |||||| |||| ||||||||||||||| ||||||||| ||||||| |
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| T |
7891895 |
taagcctccctacatctatcagcctttataaaaggtttagtttttctttcggattttctaggcttttcaactttcgg------tctctttcg-gagtctt |
7891803 |
T |
|
| Q |
504 |
tgggaatcttaggagcaagaggatatgaatc |
534 |
Q |
| |
|
||| ||||||||||| ||||||| ||||||| |
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| T |
7891802 |
tggaaatcttaggaggaagaggagatgaatc |
7891772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 240 - 462
Target Start/End: Original strand, 10426560 - 10426791
Alignment:
| Q |
240 |
taaagaaatacttcgatgaatgtacctgttttcctagagtgcggttcaatagcatacatataactaacactctccatggatcgtggaaatgttgctcttg |
339 |
Q |
| |
|
||||||||||||| |||||||||||||||| | | ||||||||||| ||||||||||||||| | ||| ||||||||||| |||||||| | |||||| |
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|
| T |
10426560 |
taaagaaatactttgatgaatgtacctgttcacatttagtgcggttcagtagcatacatataacaatcaccctccatggatcatggaaatgatcctcttg |
10426659 |
T |
|
| Q |
340 |
aaggagagggaattcaaaaccagaaggtg---------gaggcacccagttattatcaagtgttttccttttgtaagcctccctgcatctatcagcctta |
430 |
Q |
| |
|
||||||||| ||||| || ||||| |||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
10426660 |
aaggagaggcttttcaacgagaggaggtgtagaacgtggaggcacccaattattatccggtgttttccttttgtaaacctccctacatctattagcctta |
10426759 |
T |
|
| Q |
431 |
agaaaaggtttagtttttctgttggatttcct |
462 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
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|
| T |
10426760 |
agaaaaggtttagtttttcttttggatttcct |
10426791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 7892361 - 7892210
Alignment:
| Q |
15 |
tcaacatgtagtcatcaacaagctactaacagaagcagcagttcagctccaaattcttaatcataatttcctaagcaagacc-tcaagaggataaatttc |
113 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| | |||||| | |||||||||| || ||||||| ||||||| | || ||||||||||||||||| |
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| T |
7892361 |
tcaacatgtagtcatcaataagcttctaacagaagcggaagttcaacaccaaattctttattataatttgctaagcagggccctcaagaggataaatttc |
7892262 |
T |
|
| Q |
114 |
aaatatgacattatggcaatacgatccgaagataattaacagattagaaagc |
165 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||| |||||||| ||||||||| |
|
|
| T |
7892261 |
aaatatgacattatagcattacgatatgaagacgattaacagtttagaaagc |
7892210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 492 - 572
Target Start/End: Original strand, 10426791 - 10426880
Alignment:
| Q |
492 |
ttcgagagtctttgggaatcttaggagcaagaggatatgaat---------ctgttccttcatgttctctcttattaacaaactctctga |
572 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||||| ||||||||| |
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| T |
10426791 |
ttcgagagtctttgggaatcttaggaggaagaggatatgaatcctcttcaacagttcctttatgttctctcttattaacacactctctga |
10426880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 534
Target Start/End: Original strand, 7892533 - 7892584
Alignment:
| Q |
483 |
tcggtctctttcgagagtctttgggaatcttaggagcaagaggatatgaatc |
534 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||| ||||||| ||||||| |
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|
| T |
7892533 |
tcggtctctttcgagagtctgtggaaatcttaggaggaagaggagatgaatc |
7892584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 10426363 - 10426424
Alignment:
| Q |
104 |
gataaatttcaaatatgacattatggcaatacgatccgaagataattaacagattagaaagc |
165 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
10426363 |
gatatatttcaaatatgacattatagcaatgcgatccgaaaacgattaacattttagaaagc |
10426424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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