View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5266_low_2 (Length: 336)

Name: NF5266_low_2
Description: NF5266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5266_low_2
NF5266_low_2
[»] chr5 (10 HSPs)
chr5 (71-318)||(13447062-13447309)
chr5 (71-318)||(13419511-13419758)
chr5 (71-317)||(13426402-13426648)
chr5 (73-318)||(13413168-13413413)
chr5 (73-310)||(13388997-13389234)
chr5 (198-310)||(13385176-13385288)
chr5 (199-314)||(13454143-13454258)
chr5 (71-145)||(13454015-13454089)
chr5 (73-152)||(13393562-13393641)
chr5 (237-311)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (91-165)||(47601353-47601427)
chr4 (268-308)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 71 - 318
Target Start/End: Original strand, 13447062 - 13447309
Alignment:
Q  71 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447062 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 13447161  T
Q  171 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13447162 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctact 13447261  T
Q  271 ttgtctccaactttaaacttttttactttgcttcccacctctgttact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447262 ttgtctccaactttaaacttttttactttgcttcccacctctgttact 13447309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 71 - 318
Target Start/End: Original strand, 13419511 - 13419758
Alignment:
Q  71 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||||| ||||    
T  13419511 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactt 13419610  T
Q  171 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 270  Q
      ||    ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || |||    
T  13419611 tgcaccacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaact 13419710  T
Q  271 ttgtctccaactttaaacttttttactttgcttcccacctctgttact 318  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  13419711 ttgtctccaactttaaacttttctactttgcttccaacctcggttact 13419758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 71 - 317
Target Start/End: Original strand, 13426402 - 13426648
Alignment:
Q  71 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagactt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||||||||| ||||    
T  13426402 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatactt 13426501  T
Q  171 accattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctact 270  Q
    | ||    ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  13426502 agcaccacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctact 13426601  T
Q  271 ttgtctccaactttaaacttttttactttgcttcccacctctgttac 317  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||    
T  13426602 ttgtctccaactttaaacttttctactttgcttccaacctctgttac 13426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 73 - 318
Target Start/End: Original strand, 13413168 - 13413413
Alignment:
Q  73 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 172  Q
    |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||||||||| ||||      
T  13413168 tcaagaggtatgttgtcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttgg 13413267  T
Q  173 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 272  Q
    ||    ||||      | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || ||||||||    
T  13413268 caccacatgtgactacaaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctacttt 13413367  T
Q  273 gtctccaactttaaacttttttactttgcttcccacctctgttact 318  Q
    |||||||||||||||||| |  ||||||||||| || |||||||||    
T  13413368 gtctccaactttaaacttctccactttgcttcctacttctgttact 13413413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 310
Target Start/End: Complemental strand, 13389234 - 13388997
Alignment:
Q  73 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttac 172  Q
    ||||| ||||| | |||||||||| ||| ||| |||| ||| |||||||||| |||||| ||  |||||||||| ||| | || ||||| ||| ||||      
T  13389234 tcaagtggtaatccatcaggaatgtgaaccacgaagttctcatctgcaaccaatgagtcagaataacctccatatgtgctcgttccatcgcgatacttgg 13389135  T
Q  173 cattgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctacttt 272  Q
    ||    ||||   |||| || |||  |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||    
T  13389134 caccacatgtgaaagtaaatgtgggacagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctacttt 13389035  T
Q  273 gtctccaactttaaacttttttactttgcttcccacct 310  Q
    ||||||||| || ||||||| |||||||||||||||||    
T  13389034 gtctccaacattgaacttttctactttgcttcccacct 13388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 13385288 - 13385176
Alignment:
Q  198 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 297  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  298 ttgcttcccacct 310  Q
    |||||||||||||    
T  13385188 ttgcttcccacct 13385176  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 314
Target Start/End: Original strand, 13454143 - 13454258
Alignment:
Q  199 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 298  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  299 tgcttcccacctctgt 314  Q
    |||||||||| |||||    
T  13454243 tgcttcccacttctgt 13454258  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 13454015 - 13454089
Alignment:
Q  71 catcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 145  Q
    |||||||||||||   ||| |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454015 catcaagaggtaactgatctggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 13393641 - 13393562
Alignment:
Q  73 tcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 152  Q
    ||||| ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393641 tcaagtggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
Q  237 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctc 311  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| |||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc 13393403  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  91 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacga 165  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | ||||||||||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  268 actttgtctccaactttaaacttttttactttgcttcccac 308  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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