View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268-Insertion-1 (Length: 1019)

Name: NF5268-Insertion-1
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268-Insertion-1
NF5268-Insertion-1
[»] chr8 (2 HSPs)
chr8 (247-363)||(5569623-5569739)
chr8 (28-131)||(5569404-5569507)
[»] chr2 (3 HSPs)
chr2 (831-985)||(30612204-30612359)
chr2 (434-488)||(16222073-16222127)
chr2 (260-311)||(41375820-41375871)
[»] scaffold0430 (1 HSPs)
scaffold0430 (260-344)||(9227-9310)
[»] chr4 (1 HSPs)
chr4 (518-592)||(9853471-9853547)
[»] scaffold1200 (1 HSPs)
scaffold1200 (301-349)||(1769-1817)
[»] chr3 (4 HSPs)
chr3 (260-343)||(11455833-11455916)
chr3 (334-372)||(10290304-10290342)
chr3 (334-372)||(10286356-10286394)
chr3 (22-63)||(15669611-15669652)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 5569623 - 5569739
Alignment:
Q  247 ttaagcacatcacttcacaatttacacttagttaaacaacgcttcatttacaaatcattaactaactcaactataactcattacattctcatcattaaat 346  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569623 ttaatcacatcacttcacaatttacacttagttaaacaacgcttcatttacaaatcattaactaactcaactataactcattacattctcatcattaaat 5569722  T
Q  347 attcatagcacatcatg 363  Q
    |||||||||||||||||    
T  5569723 attcatagcacatcatg 5569739  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 5569404 - 5569507
Alignment:
Q  28 cacatcatcaacattacaagactatgaatgcatggatacaaagtatatactcgatgcacaacttcattttgttcatcattacatgatcatttcatcatat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569404 cacatcatcaacattacaagactatgaatgcatggatacaaagtatatactcgatgcacaacttcattttgttcatcattacatgatcatttcatcatat 5569503  T
Q  128 aata 131  Q
    ||||    
T  5569504 aata 5569507  T

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Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 831 - 985
Target Start/End: Complemental strand, 30612359 - 30612204
Alignment:
Q  831 ttttaacatgataattcaatcttcaaacacagcagcaa-aacaaaaacatcttcacttcttcaaaatcatcacaacaacgtttatcaattcaaatcataa 929  Q
    ||||||||||||||||||| || ||| || | || ||| ||||| ||  |||||||||||||||||||||||||||||| || || ||||||||||||||    
T  30612359 ttttaacatgataattcaaact-caaccataacaacaacaacaacaaactcttcacttcttcaaaatcatcacaacaacattcataaattcaaatcataa 30612261  T
Q  930 atcatcaaaccacagtctagtaacaattttcatgaagttc-ccaatttcacataaaa 985  Q
    | |||||||||||| |||||||||||  |||||||| ||| ||||||||||||||||    
T  30612260 aacatcaaaccacaatctagtaacaacattcatgaatttcaccaatttcacataaaa 30612204  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 434 - 488
Target Start/End: Complemental strand, 16222127 - 16222073
Alignment:
Q  434 cacaattcatttcataaccaatcataattcaattactagtcatcctaatctctac 488  Q
    |||||||||||||||||||||| | || || |||||||||||| |||||||||||    
T  16222127 cacaattcatttcataaccaattacaagtccattactagtcattctaatctctac 16222073  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 41375820 - 41375871
Alignment:
Q  260 ttcacaatttacacttagttaaacaacgcttcatttacaaatcattaactaa 311  Q
    ||||||||||||||||||||| ||||  ||||||| ||| ||||||||||||    
T  41375820 ttcacaatttacacttagttagacaatacttcattcacatatcattaactaa 41375871  T

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Target: scaffold0430 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 260 - 344
Target Start/End: Complemental strand, 9310 - 9227
Alignment:
Q  260 ttcacaatttacacttagttaaacaacgcttcatttacaaatcattaactaactcaactataactcattacattctcatcattaa 344  Q
    ||||||||||||||||||||||||||  |||| || ||| ||||||||||||||||||||| || ||| ||||||||||||||||    
T  9310 ttcacaatttacacttagttaaacaattcttc-ttcacatatcattaactaactcaactattacgcatcacattctcatcattaa 9227  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 518 - 592
Target Start/End: Complemental strand, 9853547 - 9853471
Alignment:
Q  518 acaatgccaagttatactcctattaattcaatttatcaccgatacttcatatttca--aaaacacatcattttactt 592  Q
    |||||||||| | |||||||||||||||||||  |||||| |||| |||||||| |  |||||||||||||||||||    
T  9853547 acaatgccaaatcatactcctattaattcaatcaatcaccaatacgtcatattttaagaaaacacatcattttactt 9853471  T

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Target: scaffold1200 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1200
Description:

Target: scaffold1200; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 1817 - 1769
Alignment:
Q  301 tcattaactaactcaactataactcattacattctcatcattaaatatt 349  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  1817 tcattaactaactcaagtattactcatcacattctcatcattaaatatt 1769  T

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Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 343
Target Start/End: Original strand, 11455833 - 11455916
Alignment:
Q  260 ttcacaatttacacttagttaaacaacgcttcatttacaaatcattaactaactcaactataactcattacattctcatcatta 343  Q
    |||||||||||||||| ||||||||| |  ||||| ||| ||||||||||| |||||  || |||||| |||||| ||||||||    
T  11455833 ttcacaatttacactttgttaaacaatgtgtcattcacatatcattaactagctcaaacattactcatcacattcacatcatta 11455916  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 10290304 - 10290342
Alignment:
Q  334 ctcatcattaaatattcatagcacatcatgttacatcat 372  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10290304 ctcatcattgaatattcatagcacatcatgttacatcat 10290342  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 10286356 - 10286394
Alignment:
Q  334 ctcatcattaaatattcatagcacatcatgttacatcat 372  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  10286356 ctcatcattgaataatcatagcacatcatgttacatcat 10286394  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 15669652 - 15669611
Alignment:
Q  22 gtgattcacatcatcaacattacaagactatgaatgcatgga 63  Q
    ||||||||||||||| | |||||||||||||||||| |||||    
T  15669652 gtgattcacatcatcgagattacaagactatgaatggatgga 15669611  T

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