View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268-Insertion-10 (Length: 252)
Name: NF5268-Insertion-10
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268-Insertion-10 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 27165338 - 27165584
Alignment:
| Q |
8 |
ggatatttacacacttgagattttgatggtagtaaagatctcctcacacaataaaggtagaacattgaggaccaaagttgaattagccatatattctctc |
107 |
Q |
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| T |
27165338 |
ggatatttacacacttgagattttgatggtagtaaagatctcctcacacaataaaggtagaacattgaggaccaaagttgaattagccatatattctctc |
27165437 |
T |
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| Q |
108 |
tataaatagtcattgaagagagacaccataacatattcattcatctccataaaa--acacacactcactaacacaattgaattgtatttcctctatcaaa |
205 |
Q |
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| T |
27165438 |
tataaatagtcattgaagagagacaccataacatattcattcatctccataaaaacacacacactcactaacacaattgaattgcatttcctctatcaaa |
27165537 |
T |
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| Q |
206 |
atttccaaatcatggctacctcaatgctcgttaagatcacttgtttg |
252 |
Q |
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| T |
27165538 |
atttccaaatcatggctacctcaatgcttgttaagatcacttgtttg |
27165584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 27220040 - 27220255
Alignment:
| Q |
25 |
agattttgatggtagtaaagatctcctc---acacaataaaggtagaacattgaggaccaaagttgaattagccatatattctctctataaata-----g |
116 |
Q |
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| T |
27220040 |
agattttgatggtggtaatgatctcctcctcacacaataaatgtagaacgttggggaccaaagttgaattaaccgtatattctttctataaataaaatag |
27220139 |
T |
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| Q |
117 |
tcattgaagagagacaccataacatattcattcatctccataaa--------aacacacactcactaacacaattgaattgtatttcctctatcaaaatt |
208 |
Q |
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| T |
27220140 |
tcatgaaagagagatgc------ata---attcatctccataaacacacacaaacacacactcactaacacacttgaatagcatttcctctatcaaaatt |
27220230 |
T |
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| Q |
209 |
tccaaatcatggctacctcaatgct |
233 |
Q |
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| T |
27220231 |
tccaaatcatggctagttcaatgct |
27220255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 27147104 - 27147180
Alignment:
| Q |
176 |
acacaattgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgctcgttaagatcacttgtttg |
252 |
Q |
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| T |
27147104 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttg |
27147180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 27157968 - 27158044
Alignment:
| Q |
176 |
acacaattgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgctcgttaagatcacttgtttg |
252 |
Q |
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| T |
27157968 |
acacacttgaattgcatttcctctatcaaaatttccaaatcatggctagctcaatgcttattaaggttacttgtttg |
27158044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 27304349 - 27304417
Alignment:
| Q |
165 |
cacactcactaacacaattgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgct |
233 |
Q |
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| T |
27304349 |
cacactcactaacacacttgaattgcatttcctcttccaaaatttccaaatcatggctagttcaatgct |
27304417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 27301492 - 27301557
Alignment:
| Q |
168 |
actcactaacacaattgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgct |
233 |
Q |
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| T |
27301492 |
actcactaacacacttgaatagcatttcctcttccaaaatttccaaatcatggctagttcaatgct |
27301557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 27134056 - 27134128
Alignment:
| Q |
176 |
acacaattgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgctcgttaagatcacttgt |
249 |
Q |
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| T |
27134056 |
acacacttgaatagcatttcctctatc-aaatctccaaaccatggctagctcaatgcttgttaagattacttgt |
27134128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 27281666 - 27281736
Alignment:
| Q |
182 |
ttgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgctcgttaagatcacttgtttg |
252 |
Q |
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| T |
27281666 |
ttgaattacatttcctcttccaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttg |
27281736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 27296134 - 27296204
Alignment:
| Q |
182 |
ttgaattgtatttcctctatcaaaatttccaaatcatggctacctcaatgctcgttaagatcacttgtttg |
252 |
Q |
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| T |
27296134 |
ttgaattgcatttcctcttcaaaaatttccaaatcatggctagttcaatgcttgtcaaggttacttgtttg |
27296204 |
T |
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