View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268-Insertion-11 (Length: 195)
Name: NF5268-Insertion-11
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268-Insertion-11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 195
Target Start/End: Complemental strand, 11182438 - 11182249
Alignment:
| Q |
6 |
caactttgatattaaaagtaattaagtacccattatcattaaattgacttatgcataaaagattgtgtttaaatcattcaacatggataacatctttaat |
105 |
Q |
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| T |
11182438 |
caactttgatattaaaagtaattaaatacccattatcattaaattgacttatgcataaaagattgtgtttaaatcattcaacatggataacatctttaat |
11182339 |
T |
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| Q |
106 |
aacattgttggaggagagtgttgaaaagtaagtgttgctagcatttatctttctacaaaacctttacctaaaattgtgcctttattattc |
195 |
Q |
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| T |
11182338 |
aacattgttggaggagagtgttgaaaagtaagtgttgctagcatttatctttctacaaaacctttacctaaaattgtgcctttattattc |
11182249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 150
Target Start/End: Complemental strand, 5979912 - 5979881
Alignment:
| Q |
119 |
gagagtgttgaaaagtaagtgttgctagcatt |
150 |
Q |
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| T |
5979912 |
gagagtgttgaaaagtaagtgttgctagcatt |
5979881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 12263584 - 12263612
Alignment:
| Q |
119 |
gagagtgttgaaaagtaagtgttgctagc |
147 |
Q |
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| T |
12263584 |
gagagtgttgaaaagtaagtgttgctagc |
12263612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 25630839 - 25630807
Alignment:
| Q |
119 |
gagagtgttgaaaagtaagtgttgctagcattt |
151 |
Q |
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| T |
25630839 |
gagagtgttgaaaagtaagtattgctagcattt |
25630807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 8108988 - 8108956
Alignment:
| Q |
119 |
gagagtgttgaaaagtaagtgttgctagcattt |
151 |
Q |
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| T |
8108988 |
gagagtgttgaaaagtgagtgttgctagcattt |
8108956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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