View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5268-Insertion-4 (Length: 550)
Name: NF5268-Insertion-4
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268-Insertion-4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 550
Target Start/End: Original strand, 35771303 - 35771846
Alignment:
| Q |
7 |
agtaatattttgcatcgaataggtacatctatcgaagaattgccctcgtcaatttggtgttgccagaaactgaagatgattgatctacacaattgtgaca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771303 |
agtaatattttgcatcgaataggtacatctatcgaagaattgccctcgtcaatttggtgttgccagaaactgaagatgattgatctacacaattgtgaca |
35771402 |
T |
|
| Q |
107 |
atcttctaggttttggggacaatattgaaaactatatagaaattggatctcttaatactctggtcctttctgggtgcaaacaactcaatgcatcaaatct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771403 |
atcttctaggttttggggacaatattgaaaactatatagaaattggatctcttaatactctggtcctttctgggtgcaaacaactcaatgcatcaaatct |
35771502 |
T |
|
| Q |
207 |
ctatttcaacatcaaagcatggcaatcaactttaacctcgctgaatttggaaaactgttgcaacttagaggcactacctgacaacattggtttattatca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35771503 |
ctatttcaacatcaaagcatggcaatcaactttaacctcgctgaatttggaaaactgttgcaacttaaaggcactacctgacaacattggtttattatca |
35771602 |
T |
|
| Q |
307 |
tcgttgcaacgcttaaggctaagtggaagcaatgttgagagtttgataccaaacataaaaaatctcaacaacctcaaagaactaaggttagactactgca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771603 |
tcgttgcaacgcttaaggctaagtggaagcaatgttgagagtttgacaccaaacataaaaaatctcaacaacctcaaagaactaaggttagactactgca |
35771702 |
T |
|
| Q |
407 |
agaaactcgtgtccgtatctgtgtctgactttccaccgtcactgcgattgtttagtgctattaactgcatttctcttgtcactgaccttactacattgga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771703 |
agaaactcgtgtccgtatctgtgtctgactttccaccgtcactgcgattgtttagtgctattaactgcatttctcttgtcactgaccttactacattgga |
35771802 |
T |
|
| Q |
507 |
cataccctttgaacatagatcgaaacctcaaccatatcctcaat |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771803 |
cataccctttgaacatagatcgaaacctcaaccatatcctcaat |
35771846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University