View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268-Insertion-7 (Length: 327)

Name: NF5268-Insertion-7
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268-Insertion-7
NF5268-Insertion-7
[»] chr2 (1 HSPs)
chr2 (31-327)||(41846814-41847129)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 327
Target Start/End: Original strand, 41846814 - 41847129
Alignment:
Q  31 aattcttaaatgaaaaggatagtgtgacgttcgcttattggtgaaggccatgaatgactgaccattaatgtataag-------------agtggtttctg 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             |||| ||||||    
T  41846814 aattcttaaatgataaggatagtgtgacgttcgcttattggtgaaggccatgaatgagtgaccattaatgtataaggcgcaaaataaagagtgatttctg 41846913  T
Q  118 tgatattttcaatggagacccatgatcacataggaataagaaagacatgaagaggtggaaggataagaacatgtgaatgacatgaat------tgaaatg 211  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||      |||||||    
T  41846914 tgatattttcattggagacccatgatcacatagaaatgagaaagacatgaagaggtggaaggataagaacatgtgaatgacataaatacacattgaaatg 41847013  T
Q  212 agagaaacacagacaatatatgaatgagatgtttaattaaagattgttaaaagttctgatgggaatgagatatttagctaacgatagctaaaaggaattg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41847014 agagaaacacagacaatatatgaatgagatgtttaattaaagattgttaaaagttctgatgggaatgagatatttagctaaagatagctaaaaggaattg 41847113  T
Q  312 attagcacttctaata 327  Q
    ||||||||||||||||    
T  41847114 attagcacttctaata 41847129  T

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