View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268-Insertion-8 (Length: 300)

Name: NF5268-Insertion-8
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268-Insertion-8
NF5268-Insertion-8
[»] chr1 (9 HSPs)
chr1 (8-128)||(10609383-10609499)
chr1 (215-286)||(7494014-7494085)
chr1 (140-274)||(48777522-48777656)
chr1 (214-283)||(33409450-33409519)
chr1 (214-255)||(29681752-29681793)
chr1 (214-255)||(48366052-48366093)
chr1 (144-194)||(7494113-7494166)
chr1 (140-182)||(39618027-39618069)
chr1 (140-172)||(48365966-48365998)
[»] chr2 (11 HSPs)
chr2 (125-286)||(10586008-10586173)
chr2 (140-286)||(5380721-5380869)
chr2 (214-282)||(25280681-25280749)
chr2 (214-286)||(1592494-1592566)
chr2 (218-286)||(10413257-10413325)
chr2 (214-286)||(36313976-36314048)
chr2 (214-285)||(12563394-12563465)
chr2 (214-286)||(19590357-19590430)
chr2 (140-195)||(12563318-12563375)
chr2 (213-255)||(21612821-21612863)
chr2 (127-172)||(21612728-21612773)
[»] chr4 (9 HSPs)
chr4 (140-286)||(32823109-32823257)
chr4 (214-286)||(46722785-46722857)
chr4 (140-286)||(31939801-31939950)
chr4 (140-286)||(13770340-13770494)
chr4 (214-285)||(8673687-8673758)
chr4 (214-286)||(19032448-19032520)
chr4 (213-257)||(24783004-24783048)
chr4 (143-194)||(46722879-46722932)
chr4 (214-255)||(21734378-21734419)
[»] chr3 (5 HSPs)
chr3 (143-286)||(30343572-30343721)
chr3 (216-285)||(40286044-40286113)
chr3 (213-286)||(35733867-35733940)
chr3 (140-194)||(40286132-40286189)
chr3 (213-255)||(52725184-52725226)
[»] chr7 (11 HSPs)
chr7 (126-286)||(45809261-45809428)
chr7 (140-286)||(303933-304081)
chr7 (140-286)||(2830036-2830184)
chr7 (230-286)||(7527900-7527956)
chr7 (216-255)||(5481101-5481140)
chr7 (213-255)||(11469431-11469473)
chr7 (213-255)||(31174038-31174080)
chr7 (140-182)||(36558794-36558836)
chr7 (213-255)||(41532991-41533033)
chr7 (214-255)||(5436528-5436569)
chr7 (140-172)||(41533081-41533113)
[»] chr5 (5 HSPs)
chr5 (213-286)||(39684544-39684617)
chr5 (213-285)||(17172695-17172767)
chr5 (213-255)||(21361484-21361526)
chr5 (226-285)||(8404004-8404063)
chr5 (127-172)||(21361574-21361619)
[»] chr6 (5 HSPs)
chr6 (140-285)||(30383582-30383732)
chr6 (145-285)||(582650-582793)
chr6 (126-286)||(3886723-3886886)
chr6 (214-285)||(7640286-7640357)
chr6 (144-194)||(7640377-7640429)
[»] scaffold0049 (1 HSPs)
scaffold0049 (213-286)||(15639-15712)
[»] chr8 (2 HSPs)
chr8 (140-286)||(2812603-2812751)
chr8 (214-286)||(18606602-18606674)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 10609499 - 10609383
Alignment:
Q  8 aagataaagtaaaatttactaccaaacaaaccatttatgaacacaaatattaaaaagggacagagttagagatatacgagaatgagaaagagatgatagc 107  Q
    ||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  10609499 aagataaagtaaaatttactatcaaac----catttatgaacacaaatattaaaaagggacagagtaagagatatacgagaatgagaaagagatgacagc 10609404  T
Q  108 aagaaatacgaaagatacaat 128  Q
    |||||||||||||||||||||    
T  10609403 aagaaatacgaaagatacaat 10609383  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 7494085 - 7494014
Alignment:
Q  215 cacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7494085 cacaataactattacttatataaaatattcttcataaaatatacacttgattcaacatgaacggattatacc 7494014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 274
Target Start/End: Complemental strand, 48777656 - 48777522
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataa 237  Q
    ||||||||||||| ||||||||| | |||||||||| ||||||  |||||||||||||  ||||||          ||||||||| ||||||||||||||    
T  48777656 ctagcaatattttcatgaggtggccgcatataaagattttttttaaaactaatctaatctagtaggtaaaaaaa--tcacaataactattacttatataa 48777559  T
Q  238 aatgttcttcataaaatatacacttgattcaacatga 274  Q
    |||||||||||||||||||||||||||||||||||||    
T  48777558 aatgttcttcataaaatatacacttgattcaacatga 48777522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 33409450 - 33409519
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattat 283  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  33409450 tcacaataactattacttatataaaatgttcttcataaaatatacacttgattcaacaagaacgaattat 33409519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 29681793 - 29681752
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaata 255  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  29681793 tcacaataaatattacttatataaaatgtacttcataaaata 29681752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 48366052 - 48366093
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaata 255  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  48366052 tcacaataaatattacttatataaaatgtacttcataaaata 48366093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 7494166 - 7494113
Alignment:
Q  144 caatatttttatgaggtggtcacatataaaga---attttttaaactaatctaa 194  Q
    ||||||||| || |||||||||||||||||||   |||||||||||||||||||    
T  7494166 caatattttcataaggtggtcacatataaagaattattttttaaactaatctaa 7494113  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 39618027 - 39618069
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt 182  Q
    |||| |||||||||||||||||| |||||||||||| ||||||    
T  39618027 ctagtaatatttttatgaggtggccacatataaagattttttt 39618069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 48365966 - 48365998
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataa 172  Q
    ||||||||||||||||||||||| |||||||||    
T  48365966 ctagcaatatttttatgaggtggccacatataa 48365998  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 286
Target Start/End: Complemental strand, 10586173 - 10586008
Alignment:
Q  125 caatcagcggttaaactagcaatatttttatgaggtggtcacatataaagaatttttt---aaactaatctaattcagtaggcnnnnnnnnt-tcacaat 220  Q
    ||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||   || |||||||||   |||||||          |||||||    
T  10586173 caatcagcggtgaagctagcaatattttcatgaggtggccacatataaagaatttttttttaagctaatctaaccaagtaggcaaaaaaaaaatcacaat 10586074  T
Q  221 aattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10586073 aattattacttatataaaatgttcttcataaaatatccacttgattcaacatgaacggattatacc 10586008  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 5380721 - 5380869
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataa 237  Q
    ||||||||| || |||||||||  |||||||||||| ||||||  ||||||| ||||   |||||||        |||||| ||| ||||||||||||||    
T  5380721 ctagcaataattctatgaggtgaccacatataaagatttttttttaaactaaactaaccgagtaggcaacaaaaattcacattaactattacttatataa 5380820  T
Q  238 aatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5380821 aatgttcttcataaaatatacacttgattcaacaagtacggattatacc 5380869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 25280749 - 25280681
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggatta 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  25280749 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacaaaaacggatta 25280681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 1592494 - 1592566
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  1592494 tcacgataactattacctatataaaatgttcttcataaaatatacatttgattcagcatgaacggattatacc 1592566  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 10413325 - 10413257
Alignment:
Q  218 aataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||    
T  10413325 aataattattacttatataaaatgttcttaataaaatatacatttgattcaacaagaacagattatacc 10413257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 36313976 - 36314048
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||| |||| |||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  36313976 tcaccataactattacctatataaaatgttcttcatcaaatatacacttgattcagcatgaacggattatacc 36314048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 12563394 - 12563465
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||| |||||||||||| ||||||| |||||||||| | ||| |||||||||| ||||| |||||||    
T  12563394 tcacaataactattacttatattaaatgttattcataaaatgttcacctgattcaacaagaacgaattatac 12563465  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 19590357 - 19590430
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatac--acttgattcaacatgaacggattatacc 286  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||  |||||||| ||||  || ||||||||||    
T  19590357 tcacaataagtattacttatataaaatattc-tcataaaatatacgtacttgattaaacaataatggattatacc 19590430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 12563318 - 12563375
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttt--ttaaactaatctaat 195  Q
    ||||||||||||| ||||||||| || ||||||||||||||  |||||||||| ||||    
T  12563318 ctagcaatattttcatgaggtggccatatataaagaatttttgttaaactaatttaat 12563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 21612821 - 21612863
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||||||| || |||||||||||||||| ||||||||||||    
T  21612821 ttcacaataaatagtacttatataaaatgtacttcataaaata 21612863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 21612728 - 21612773
Alignment:
Q  127 atcagcggttaaactagcaatatttttatgaggtggtcacatataa 172  Q
    ||||||||  || ||||||||||||||||||||||| |||||||||    
T  21612728 atcagcggcgaagctagcaatatttttatgaggtggccacatataa 21612773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 32823109 - 32823257
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataa 237  Q
    ||||||||||||| |||||||||||| ||||||||||||||||  ||||||||||||| ||||||||        | |||||||| ||||||||||||||    
T  32823109 ctagcaatattttcatgaggtggtcatatataaagaattttttttaaactaatctaatccagtaggcaaaaaaaat-cacaataactattacttatataa 32823207  T
Q  238 aatgttcttcataaaatatacacttgattcaacatgaacg-gattatacc 286  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  32823208 aatgttcttcataaaatatacacttgatttaacatgaacgagattatacc 32823257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 46722857 - 46722785
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46722857 tcacaataattattacttatataaaatgttcttcataaaatatccacttgattcaacatgaacggattatacc 46722785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 31939801 - 31939950
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaattttttaaactaatctaattcagtaggcnnnnnnnn---ttcacaataattattacttatata 236  Q
    |||| |||||||| |||||||||||||||||| | |  ||||| ||||||||||||| |||||||           ||||||||||||||||||||||||    
T  31939801 ctagtaatattttcatgaggtggtcacatatatatatattttttaactaatctaattgagtaggcaaaaaaataaattcacaataattattacttatata 31939900  T
Q  237 aaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  31939901 aaatgttcttcataaaatatacacttgattcaacgagaacagattatacc 31939950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 286
Target Start/End: Complemental strand, 13770494 - 13770340
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaattttt--------taaactaatctaattcagtaggcnnnnnnnnttcacaataattattactt 231  Q
    ||||||||| || |||||||||| ||||||||||||||||||        |||||||| ||||  ||||||||        |||||||||| ||||||||    
T  13770494 ctagcaataattctatgaggtggccacatataaagaatttttattttttttaaactaaactaacccagtaggcaacaaaaattcacaataactattactt 13770395  T
Q  232 atataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  13770394 atataaaatgttcttcataaaatatatatttgattcaacaagaacggattatacc 13770340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 8673758 - 8673687
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  8673758 tcacaataactattacttatataaaatgttgttcataaaatatacacttgattcaacaagaactgattatac 8673687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 19032448 - 19032520
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||||||||||| || | |||| |||||||||    
T  19032448 tcacaatacttactacttatataaaatgttctttataaaatatacacttgattaaataagaacagattatacc 19032520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 24783004 - 24783048
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaatata 257  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  24783004 ttcacaataactattacttatataaaatgttcttcataaaatata 24783048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 46722932 - 46722879
Alignment:
Q  143 gcaatatttttatgaggtggtcacatataaagaatt--ttttaaactaatctaa 194  Q
    |||||||||| ||||||||| |||||||||||||||  |||||| |||||||||    
T  46722932 gcaatattttcatgaggtggccacatataaagaattttttttaagctaatctaa 46722879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 21734419 - 21734378
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||| || ||||||||||||||||||| ||||||||||||    
T  21734419 tcacaacaactattacttatataaaatgtacttcataaaata 21734378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 30343721 - 30343572
Alignment:
Q  143 gcaatatttttatgaggtggtcacatataaagaatttttt---aaactaatctaattcagtaggcnnnnnnnnt---tcacaataattattacttatata 236  Q
    ||||||||||||||||||||||||||||||||||||||||   || |||||||||   |||||||            |||||||||||||||||||||||    
T  30343721 gcaatatttttatgaggtggtcacatataaagaatttttttttaagctaatctaaccaagtaggcaaaaaaaaaaaatcacaataattattacttatata 30343622  T
Q  237 aaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30343621 aaatgttcttcataaaatatccacttgattcaacatgaacggattatacc 30343572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 40286113 - 40286044
Alignment:
Q  216 acaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  40286113 acaataattattacttatataaaatgttcttcacaaaatatacacttgattcaacaagaacggattatac 40286044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 35733867 - 35733940
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  35733867 ttcacaataactattaattatataaaatattcttcataaaatatacacttgattcaacaagaacgggttatacc 35733940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 40286189 - 40286132
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt---aaactaatctaa 194  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||   ||||||||||||    
T  40286189 ctagcaatattttcatgaggtgggcacatataaagatttttttttaaaactaatctaa 40286132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 52725226 - 52725184
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||||||| || |||||||||||||||| ||||||||||||    
T  52725226 ttcacaataaatagtacttatataaaatgtacttcataaaata 52725184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 286
Target Start/End: Original strand, 45809261 - 45809428
Alignment:
Q  126 aatcagcggttaaactagcaatatttttatgaggtggtcacatataaagaatt---ttttaaactaatctaattcagtaggcnnnnnnnntt----caca 218  Q
    |||||||||  || ||| ||||||||| |||||||||||||||||||||||||   ||||||||||||||||  ||||||||              ||||    
T  45809261 aatcagcggcgaagctaacaatattttcatgaggtggtcacatataaagaattattttttaaactaatctaacccagtaggcaaaaaaaaaaaaaccaca 45809360  T
Q  219 ataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45809361 ataactattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 45809428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 286
Target Start/End: Original strand, 303933 - 304081
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataa 237  Q
    ||||||||| || |||||||||| |||||||||||| ||||||  ||| ||| ||||  ||||||||        |||||||||| ||||||||||||||    
T  303933 ctagcaataattctatgaggtggccacatataaagatttttttttaaattaaactaacccagtaggcaacaaaaattcacaataactattacttatataa 304032  T
Q  238 aatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  304033 aacgttcttcataaaatatacacttgattcaacaagaacggattatacc 304081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 140 - 286
Target Start/End: Complemental strand, 2830184 - 2830036
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataa 237  Q
    ||||||||| || ||||||||||||||||||||||  ||||||  ||| ||| ||||  ||||||||        |||||||||| ||||||||||||||    
T  2830184 ctagcaataattctatgaggtggtcacatataaagttttttttttaaattaaactaacccagtaggcaacaaaaattcacaataaatattacttatataa 2830085  T
Q  238 aatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    || ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  2830084 aacgttcttcataaaatatacacttgattctacaagaacggattatacc 2830036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 7527956 - 7527900
Alignment:
Q  230 ttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||    
T  7527956 ttatataaaatgttcttcataaattatacacttgattcaacaagaacatattatacc 7527900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 5481140 - 5481101
Alignment:
Q  216 acaataattattacttatataaaatgttcttcataaaata 255  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  5481140 acaataaatattacttatataaaatgtacttcataaaata 5481101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 11469473 - 11469431
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||||||| |||||| |||||||||||| ||||||||||||    
T  11469473 ttcacaataaatattacgtatataaaatgtacttcataaaata 11469431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 31174038 - 31174080
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    ||||||| || ||||||||||||||||||| ||||||||||||    
T  31174038 ttcacaacaactattacttatataaaatgtacttcataaaata 31174080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 36558836 - 36558794
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt 182  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||    
T  36558836 ctagcaatattttcatgaggtggccacatataaagattttttt 36558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 41533033 - 41532991
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||||||| || |||||||||||||||| ||||||||||||    
T  41533033 ttcacaataaatagtacttatataaaatgtacttcataaaata 41532991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 5436528 - 5436569
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaata 255  Q
    ||||||||| ||||||||||||||||| | ||||||||||||    
T  5436528 tcacaataaatattacttatataaaatctacttcataaaata 5436569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Complemental strand, 41533113 - 41533081
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataa 172  Q
    ||||||||||||||||||||||| |||||||||    
T  41533113 ctagcaatatttttatgaggtggccacatataa 41533081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 39684544 - 39684617
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39684544 ttcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacaagaacggattatacc 39684617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 17172767 - 17172695
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||||    
T  17172767 ttcacaataactattacttatataaaatgttcttcataaaatatacacttgaaccaacaagaacgaattatac 17172695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 21361526 - 21361484
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaata 255  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  21361526 ttcacaataaatattacttatataaaatgtacttcataaaata 21361484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 8404063 - 8404004
Alignment:
Q  226 ttacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    |||||||||||||| | ||||||||||| |||||||||||| |||| ||||  |||||||    
T  8404063 ttacttatataaaacgatcttcataaaacatacacttgattaaacaggaacaaattatac 8404004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 21361619 - 21361574
Alignment:
Q  127 atcagcggttaaactagcaatatttttatgaggtggtcacatataa 172  Q
    ||||||||  || ||||||||||||||||||||||| |||||||||    
T  21361619 atcagcggcgaagctagcaatatttttatgaggtggccacatataa 21361574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 30383582 - 30383732
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttta-----aactaatctaattcagtaggcnnnnnnnnttcacaataattattacttata 234  Q
    ||||||||| || |||||||||| |||||||||||||||||||      |||||| ||||  ||||||||        |||||||||| |||||||||||    
T  30383582 ctagcaataattctatgaggtggccacatataaagaatttttttttttgaactaaactaacccagtaggcaacaaaaattcacaataactattacttata 30383681  T
Q  235 taaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  30383682 taaaatgttcttcataaaatatacacttgattcaacaagaacggagtatac 30383732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 582650 - 582793
Alignment:
Q  145 aatatttttatgaggtggtcacatataaagaatttttt---aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatataaaatg 241  Q
    |||||||||||||||||| |||||||||||| ||||||   |||||||||||| |   |||||         |||| |||| |||||| |||||||||||    
T  582650 aatatttttatgaggtggccacatataaagatttttttttaaaactaatctaacttgataggcaaagaaaaatcacgataactattacctatataaaatg 582749  T
Q  242 ttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  582750 ttcttcataaaatatacacttgattcagcatgaacggattatac 582793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 3886886 - 3886723
Alignment:
Q  126 aatcagcggttaaactagcaatatttttatgaggtggtcacatataaaga--attttttaaactaatctaattcagtaggc-nnnnnnnnttcacaataa 222  Q
    |||||||||  || |||| |||||||| ||||||||| ||||||||||||   |||||||||||||| |||||   |||||          |||| ||||    
T  3886886 aatcagcggcgaagctagtaatattttcatgaggtggccacatataaagatttttttttaaactaatttaatttgataggcaaaaaaaaaatcacgataa 3886787  T
Q  223 ttattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
     |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3886786 ctattacctatataaaatgttcttcataaaatatacacttgattcagcatgaacggattatacc 3886723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 7640357 - 7640286
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatac 285  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  7640357 tcacaataaatattacttatataaaatgttcttcataaaatatacacttgattaaacaagaacgaattatac 7640286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 7640429 - 7640377
Alignment:
Q  144 caatatttttatgaggtggtcacatataaagaatttttt--aaactaatctaa 194  Q
    ||||||||| ||||||||| |||||||||||| ||||||  ||||||||||||    
T  7640429 caatattttcatgaggtggccacatataaagattttttttaaaactaatctaa 7640377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 15712 - 15639
Alignment:
Q  213 ttcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15712 ttcacaataactattacttatataaaatgttcttcataaaatatacacttgattcaacaagaacggattatacc 15639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 286
Target Start/End: Complemental strand, 2812751 - 2812603
Alignment:
Q  140 ctagcaatatttttatgaggtggtcacatataaagaatttttt---aaactaatctaattcagtaggcnnnnnnnnttcacaataattattacttatata 236  Q
    ||||||| ||||| ||||| ||| |||||||||||||||||||   ||||||||||||  ||||||||        | |||||||| ||| |||||||||    
T  2812751 ctagcaacattttcatgagatggccacatataaagaatttttttttaaactaatctaacccagtaggcaaaaaaaat-cacaataactatgacttatata 2812653  T
Q  237 aaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  2812652 aaatgttcttcataaaatataaacttgactaaacatgaacggattatacc 2812603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 18606674 - 18606602
Alignment:
Q  214 tcacaataattattacttatataaaatgttcttcataaaatatacacttgattcaacatgaacggattatacc 286  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18606674 tcacgataactattacctatataaaatgttcttcataaaatatacacttgattcagcatgaacggattatacc 18606602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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