View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268-Insertion-9 (Length: 284)
Name: NF5268-Insertion-9
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268-Insertion-9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 8168121 - 8167845
Alignment:
| Q |
8 |
ttatttattgatattaacttactcatttcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattg |
107 |
Q |
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| T |
8168121 |
ttatttattgatattaacttactcatttcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattg |
8168022 |
T |
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| Q |
108 |
gaaattcgaaaaacaacatgggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagag |
207 |
Q |
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| T |
8168021 |
gaaattcgacaaacaacaatggaaaatcttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagag |
8167922 |
T |
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| Q |
208 |
tacttgggatatcttttcaaattgttaacgaaatcgacataaattattccaaatcgtactgtgtaccctgcatccca |
284 |
Q |
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| T |
8167921 |
tacttgggatatctcttcaaattgttaacgaaatcgacataaattattccaaatcgtactgtgtaccctgcatccca |
8167845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 8143261 - 8143023
Alignment:
| Q |
46 |
taattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgaaaaacaacatgggaaaatcttagacatgc |
145 |
Q |
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| T |
8143261 |
taattggtatcaccaattatctcaatacatatgagcgcaagtaacatactaaggtgacactggaaattcgacaaacaacaatggaaaatcttagacatgc |
8143162 |
T |
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| Q |
146 |
caaatgaacatcaaatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgttaacgaaatcgac |
245 |
Q |
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| T |
8143161 |
caaatgaacatcaaatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaatttgttaacgaaatccac |
8143062 |
T |
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| Q |
246 |
ataaattattccaaatcgtactgtgtaccctgcatccca |
284 |
Q |
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| T |
8143061 |
ataaattattccaaatcgtactgtgtaccctgcatccca |
8143023 |
T |
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