View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_high_1 (Length: 820)
Name: NF5268_high_1
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 12 - 675
Target Start/End: Complemental strand, 1266245 - 1265584
Alignment:
| Q |
12 |
cagagaagaaaatgaggaagaaggcgaccaacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgagga |
111 |
Q |
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| T |
1266245 |
cagagaagaaaatgaggaagaaggcgaccgacaatgtcatggcttatagttttcatgtcttgtgaggttgatttggaaacaagggaagccatgtcgagga |
1266146 |
T |
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| Q |
112 |
tgttcccggtgaagaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgtagtggagtgaggaagtaacatgataggttttc |
211 |
Q |
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| T |
1266145 |
tgttcccggtgaagaagctaggtctcgggccccgaacaccttgcatctccatgattttcttgatgcgcagtggagtgaggaagtaacatgataggttttc |
1266046 |
T |
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| Q |
212 |
atacaagagtttaaatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatgannnnnnnnnnnngtggtgctaatatatat |
311 |
Q |
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| T |
1266045 |
atacaagagtttaaatagaaaagtcactagtatgaacaaaagtatattaagaaccaccatcatggagatgatttttttttt--gtggtgccaatatatat |
1265948 |
T |
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| Q |
312 |
tttgggatgatgagaagtgaatttgagattataggaagttagagtattgatatgagatgggaatatgatgtgtgactcaacttatatagtgggaatttga |
411 |
Q |
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| T |
1265947 |
tttgggatgatgagaagtgaatttgagattataggaagttagagtagtgatatgagatgggaatatgatgtgtgactcaacttatatagtgggaatttga |
1265848 |
T |
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| Q |
412 |
tctgtgactattacttcatttttatatacacacactgtggctgagttgagttattaaattttgtttagtggttttgagaaagtgtttgtgattcatcatt |
511 |
Q |
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| T |
1265847 |
tctgtgactattccttcatttttatatacacacactgtggctgagttgagttattaaattttgtttagtggttttaagaaagtgtttgtgattcatcatt |
1265748 |
T |
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| Q |
512 |
actcattgctttgaagacaaaggagggtgtagtgtgtgtacatacatagaaatgagctgttcataagggatatgacacaatattttttacacatatgcag |
611 |
Q |
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| T |
1265747 |
actcatagctttgaagacaaaggagggtgtagtgtgtgtacatacatagaaatgagctgttcataagggatatgacacaatattttttacacatatgcaa |
1265648 |
T |
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| Q |
612 |
gtatgcaacaagagttaattccaaaattgatgattatatttgagaatatatagagtaatatgct |
675 |
Q |
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| T |
1265647 |
gtatgcaacaagagttaattccaaaattgatgattatatttgagaatatatagagtaatatgct |
1265584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 670 - 764
Target Start/End: Complemental strand, 1265547 - 1265451
Alignment:
| Q |
670 |
tatgcttgtatctgtattg--ttttcaactttagcacttgtccactatctgcaactgaactctaattgcctatcaattggcgagaaaactctataat |
764 |
Q |
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| T |
1265547 |
tatgcttctatctgtattggtttttcaactttagcacttgtccactatctgcaactgaactctaattgcctatcaattggtgagaaaactctataat |
1265451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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