View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_high_21 (Length: 247)
Name: NF5268_high_21
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 27816587 - 27816765
Alignment:
| Q |
54 |
gttacagggggtatggtcgaccttattttcacaacaatttaaatgaataaatttatattaaaaagaaagacttatcctatcgaaaacaacattgttatct |
153 |
Q |
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| T |
27816587 |
gttacagggggtatggtcgaccttattttcacaacaatttaaatgaataaatttatattaaaaagaaagacttatcctatcgaaaacaacattgttatct |
27816686 |
T |
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| Q |
154 |
tactcaaataataaacaacctttaccgtcaaaagaataaaaacgaacaaccttattatcaggcaacaaacctaactaac |
232 |
Q |
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| T |
27816687 |
tactcaaataataaacaacctttaccgtcaaaagaataaaaacgaacaaccttattatcaggcaacaaacctaactaac |
27816765 |
T |
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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Original strand, 27816541 - 27816571
Alignment:
| Q |
13 |
aatatatatagcgaaatagatatcgtcgacc |
43 |
Q |
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| T |
27816541 |
aatatatatagcgaaatagatatcgtcgacc |
27816571 |
T |
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