View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_high_22 (Length: 247)

Name: NF5268_high_22
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_high_22
NF5268_high_22
[»] chr5 (2 HSPs)
chr5 (1-128)||(1067888-1068015)
chr5 (41-82)||(20216106-20216147)
[»] chr2 (2 HSPs)
chr2 (39-123)||(13568953-13569037)
chr2 (64-126)||(8535093-8535155)
[»] chr4 (3 HSPs)
chr4 (102-203)||(55602952-55603053)
chr4 (41-82)||(55603055-55603096)
chr4 (64-118)||(17383507-17383561)
[»] chr3 (2 HSPs)
chr3 (41-82)||(53615353-53615394)
chr3 (106-203)||(53615400-53615497)
[»] chr7 (1 HSPs)
chr7 (41-82)||(11659095-11659136)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1067888 - 1068015
Alignment:
Q  1 tcttcgtttcattcatttcactcttactatgtttccttcatcaccgccgttccaacacaacgccaccaccgacgactgttaccgaagcatcggtaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1067888 tcttcgtttcattcatttcactcttactatgtttccttcatcaccgccgttccaacacaacgccaccaccgacgactgttaccgaagcatcggtaattat 1067987  T
Q  101 cgaccgactccctctcttccgtttctcc 128  Q
    ||||||||||||||||||||||||||||    
T  1067988 cgaccgactccctctcttccgtttctcc 1068015  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 20216106 - 20216147
Alignment:
Q  41 tcaccgccgttccaacacaacgccaccaccgacgactgttac 82  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  20216106 tcaccgccgttccaacccaacgccaccaccgacgactgttac 20216147  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 123
Target Start/End: Original strand, 13568953 - 13569037
Alignment:
Q  39 catcaccgccgttccaacacaacgccaccaccgacgactgttaccgaagcatcggtaattatcgaccgactccctctcttccgtt 123  Q
    ||||||||| |||||||| ||||||||||| ||||||   ||||| |||||||||||||||| ||| |||||||||||| |||||    
T  13568953 catcaccgctgttccaacccaacgccaccatcgacgatcattaccaaagcatcggtaattatagactgactccctctctaccgtt 13569037  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 8535093 - 8535155
Alignment:
Q  64 caccaccgacgactgttaccgaagcatcggtaattatcgaccgactccctctcttccgtttct 126  Q
    ||||||||| |||||||||  |||||||||||||||| ||||||||||||||||| |||||||    
T  8535093 caccaccgaagactgttacttaagcatcggtaattatagaccgactccctctctttcgtttct 8535155  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 55603053 - 55602952
Alignment:
Q  102 gaccgactccctctcttccgtttctcctcaacttctcgcggcagctcttccaccgtcggaccctccggcgacttcgacgatgactgtgaaatctgtttcg 201  Q
    |||||||||| |||||| ||||||| || || ||||||||| |||| ||||||||| || ||| | |||||| ||||||  ||| ||| |||||||||||    
T  55603053 gaccgactccatctctttcgtttcttctgaatttctcgcggaagcttttccaccgttggccccacaggcgacgtcgacgtagaccgtgcaatctgtttcg 55602954  T
Q  202 aa 203  Q
    ||    
T  55602953 aa 55602952  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 55603096 - 55603055
Alignment:
Q  41 tcaccgccgttccaacacaacgccaccaccgacgactgttac 82  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  55603096 tcaccgccgttccaacccaacgccaccaccgacgactgttac 55603055  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 17383507 - 17383561
Alignment:
Q  64 caccaccgacgactgttaccgaagcatcggtaattatcgaccgactccctctctt 118  Q
    ||||||| | || |||||||||||||||||||||||| ||||| |||||||||||    
T  17383507 caccaccaaagattgttaccgaagcatcggtaattatagaccggctccctctctt 17383561  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 53615353 - 53615394
Alignment:
Q  41 tcaccgccgttccaacacaacgccaccaccgacgactgttac 82  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  53615353 tcaccgccgttccaacccaacgccgccaccgacgactgttac 53615394  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 53615400 - 53615497
Alignment:
Q  106 gactccctctcttccgtttctcctcaacttctcgcggcagctcttccaccgtcggaccctccggcgacttcgacgatgactgtgaaatctgtttcgaa 203  Q
    |||||| |||||| ||||||| || || ||||||||| |||| ||| ||||| || ||| |||||||| ||||||  ||| ||| |||||||||||||    
T  53615400 gactccatctctttcgtttcttctgaatttctcgcggaagcttttctaccgttggccccaccggcgacgtcgacggagaccgtgcaatctgtttcgaa 53615497  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 11659136 - 11659095
Alignment:
Q  41 tcaccgccgttccaacacaacgccaccaccgacgactgttac 82  Q
    |||| ||||||||||| |||| ||||||||||||||||||||    
T  11659136 tcactgccgttccaacccaacaccaccaccgacgactgttac 11659095  T

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