View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_high_3 (Length: 576)

Name: NF5268_high_3
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_high_3
NF5268_high_3
[»] chr2 (17 HSPs)
chr2 (274-540)||(12072415-12072681)
chr2 (313-539)||(33280202-33280428)
chr2 (10-77)||(12073041-12073108)
chr2 (414-506)||(36059926-36060020)
chr2 (386-457)||(1418909-1418984)
chr2 (397-456)||(15457501-15457564)
chr2 (414-456)||(18916075-18916117)
chr2 (386-456)||(38985698-38985772)
chr2 (387-457)||(39081398-39081472)
chr2 (386-455)||(18172929-18173002)
chr2 (421-457)||(38599402-38599438)
chr2 (184-236)||(12072723-12072772)
chr2 (422-456)||(21747259-21747293)
chr2 (397-455)||(6530661-6530723)
chr2 (397-455)||(13020425-13020487)
chr2 (414-455)||(19367440-19367481)
chr2 (397-455)||(25222325-25222387)
[»] chr3 (17 HSPs)
chr3 (306-539)||(4207268-4207500)
chr3 (307-523)||(21660428-21660644)
chr3 (306-539)||(35202631-35202864)
chr3 (386-508)||(42009251-42009379)
chr3 (386-457)||(27303187-27303262)
chr3 (385-457)||(46904742-46904818)
chr3 (414-455)||(29387775-29387816)
chr3 (414-502)||(54430505-54430595)
chr3 (386-457)||(7767063-7767138)
chr3 (386-457)||(36538175-36538250)
chr3 (414-457)||(43905864-43905907)
chr3 (386-457)||(50677303-50677378)
chr3 (397-455)||(8364174-8364236)
chr3 (414-455)||(13401461-13401502)
chr3 (426-455)||(23164605-23164634)
chr3 (414-455)||(24252622-24252663)
chr3 (414-455)||(51939577-51939618)
[»] chr6 (21 HSPs)
chr6 (312-539)||(31234829-31235056)
chr6 (313-539)||(31243966-31244191)
chr6 (343-539)||(32055979-32056173)
chr6 (336-539)||(15035725-15035927)
chr6 (306-539)||(1327511-1327744)
chr6 (303-419)||(1722125-1722242)
chr6 (388-508)||(3748559-3748685)
chr6 (397-455)||(6360762-6360823)
chr6 (386-456)||(1690622-1690696)
chr6 (486-539)||(1722243-1722296)
chr6 (397-455)||(7525166-7525228)
chr6 (313-372)||(28847698-28847757)
chr6 (396-455)||(2618357-2618420)
chr6 (307-393)||(10670053-10670138)
chr6 (397-455)||(57690-57752)
chr6 (414-455)||(628116-628157)
chr6 (312-380)||(1112424-1112493)
chr6 (323-380)||(2356637-2356693)
chr6 (414-455)||(12614737-12614778)
chr6 (397-455)||(29401142-29401204)
chr6 (388-457)||(30915357-30915430)
[»] chr7 (18 HSPs)
chr7 (316-539)||(2445699-2445920)
chr7 (386-455)||(18895386-18895459)
chr7 (386-503)||(9479079-9479202)
chr7 (386-457)||(26633363-26633438)
chr7 (412-503)||(40738010-40738103)
chr7 (414-455)||(4099970-4100011)
chr7 (397-455)||(8358294-8358356)
chr7 (323-380)||(25859186-25859242)
chr7 (397-455)||(44894029-44894091)
chr7 (386-455)||(18015571-18015644)
chr7 (414-458)||(30739122-30739166)
chr7 (386-508)||(32956722-32956850)
chr7 (414-456)||(26282563-26282605)
chr7 (414-456)||(40001717-40001759)
chr7 (386-456)||(1366010-1366084)
chr7 (426-455)||(6380117-6380146)
chr7 (397-455)||(11672588-11672650)
chr7 (421-457)||(36438379-36438415)
[»] chr5 (23 HSPs)
chr5 (374-539)||(524830-524994)
chr5 (387-510)||(37029026-37029153)
chr5 (397-508)||(13423811-13423928)
chr5 (386-455)||(29156192-29156265)
chr5 (385-457)||(16515524-16515600)
chr5 (386-453)||(7390389-7390460)
chr5 (386-456)||(17513925-17513999)
chr5 (414-506)||(138093-138187)
chr5 (386-456)||(931381-931450)
chr5 (306-380)||(35147146-35147220)
chr5 (397-455)||(13656212-13656274)
chr5 (414-455)||(19099335-19099376)
chr5 (386-456)||(43511619-43511693)
chr5 (414-454)||(33281677-33281717)
chr5 (423-457)||(5829385-5829419)
chr5 (414-456)||(10591294-10591336)
chr5 (306-380)||(11245485-11245559)
chr5 (339-380)||(7225657-7225698)
chr5 (418-455)||(13474632-13474669)
chr5 (386-456)||(20975986-20976060)
chr5 (305-373)||(17535687-17535755)
chr5 (386-455)||(18873459-18873532)
chr5 (307-355)||(22868163-22868211)
[»] chr8 (22 HSPs)
chr8 (444-539)||(7773491-7773586)
chr8 (444-539)||(7790131-7790226)
chr8 (444-539)||(7810717-7810812)
chr8 (315-456)||(5971679-5971819)
chr8 (385-454)||(7773605-7773674)
chr8 (385-454)||(7790245-7790314)
chr8 (385-454)||(7810831-7810900)
chr8 (412-506)||(42951788-42951884)
chr8 (414-455)||(43968091-43968132)
chr8 (386-455)||(3628736-3628809)
chr8 (385-506)||(32098166-32098293)
chr8 (386-456)||(12531560-12531634)
chr8 (386-456)||(34523940-34524014)
chr8 (306-378)||(4837109-4837180)
chr8 (306-378)||(4842554-4842625)
chr8 (386-456)||(33452792-33452867)
chr8 (397-455)||(3471602-3471664)
chr8 (397-455)||(7858087-7858149)
chr8 (323-380)||(8341173-8341229)
chr8 (422-455)||(27074576-27074609)
chr8 (382-456)||(39697923-39698001)
chr8 (420-457)||(42076108-42076145)
[»] chr1 (18 HSPs)
chr1 (305-501)||(32810262-32810459)
chr1 (397-456)||(5560484-5560547)
chr1 (414-506)||(15441239-15441333)
chr1 (426-506)||(27703562-27703644)
chr1 (414-455)||(12884158-12884199)
chr1 (386-456)||(12971407-12971481)
chr1 (306-380)||(52127551-52127625)
chr1 (414-456)||(3907472-3907514)
chr1 (305-367)||(7380298-7380360)
chr1 (396-455)||(18127936-18127999)
chr1 (386-457)||(24556806-24556881)
chr1 (414-456)||(30004928-30004970)
chr1 (426-455)||(28885704-28885733)
chr1 (323-380)||(48660258-48660314)
chr1 (397-455)||(50552497-50552559)
chr1 (426-508)||(52055499-52055583)
chr1 (421-457)||(44836749-44836785)
chr1 (421-457)||(50371134-50371170)
[»] scaffold0482 (2 HSPs)
scaffold0482 (444-539)||(1687-1782)
scaffold0482 (385-454)||(1599-1668)
[»] chr4 (9 HSPs)
chr4 (317-473)||(41305688-41305838)
chr4 (386-506)||(43154777-43154903)
chr4 (386-457)||(35653969-35654044)
chr4 (386-506)||(21791536-21791662)
chr4 (385-506)||(22423633-22423760)
chr4 (386-455)||(45172634-45172707)
chr4 (414-457)||(10575544-10575587)
chr4 (414-455)||(28463609-28463650)
chr4 (316-380)||(16061386-16061450)
[»] scaffold0126 (1 HSPs)
scaffold0126 (414-455)||(16712-16753)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 274 - 540
Target Start/End: Complemental strand, 12072681 - 12072415
Alignment:
Q  274 agtaatcataagagtatttatatgagagatatcagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaa 373  Q
    ||||| |||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12072681 agtaaacataagagtatttatatgagagatactaaggtcgttcatataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaa 12072582  T
Q  374 cacaattctgtaaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacatt 473  Q
    ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  12072581 cacaattctgtgaaaaagaaggaattgttgtgattctttgaaataactttttaaattgattgattaagtgattatataaattgaatggtttgataacatt 12072482  T
Q  474 aaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggttat 540  Q
     || | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12072481 gaattcttgtccaaaaaggagaactacagtctaaaggatagatgtatgttggattggtggtggttat 12072415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 539
Target Start/End: Original strand, 33280202 - 33280428
Alignment:
Q  313 gttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattcttt 412  Q
    |||||| ||||||||||| |||| ||||||||||| ||||| | ||||||||||||||||||| |||| ||  ||||| | |   ||  |||||||||||    
T  33280202 gttcctgtaaaattgaagactcggctctcataataaaaatatgtctctaataaaataaaaacaaaattatgcgaaaaatataattttagtgtgattcttt 33280301  T
Q  413 aaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggat 512  Q
    ||||||  ||||||||||||||||| |||| |||||| |||||| |||  |||||| | || || | ||||||| ||| || ||||| ||| ||||  ||    
T  33280302 aaaatagttttttaaattgattgatcaagtaattatagaaattggatgatttgatagcgttgaattcttgtccagaaaggataactaaagtataaataat 33280401  T
Q  513 agatgtatgttggattggtggtggtta 539  Q
    |||||||||||||||| ||||||||||    
T  33280402 agatgtatgttggatttgtggtggtta 33280428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 12073108 - 12073041
Alignment:
Q  10 acatcatcagacacaatgttagcatggtagggaacaaacatgattttgtgaaatatgaacgactaaac 77  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  12073108 acatcatcagacacaatgttaatatggtagggaacaaacatgattttgtgaaatatgaacgactaaac 12073041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 506
Target Start/End: Original strand, 36059926 - 36060020
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||   ||| |||||| ||| ||| ||||||| |||||  ||||||||||||||    
T  36059926 aaatagctttttaaattaactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttttgtctaaaaagtagaactagagtcta 36060020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 1418984 - 1418909
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||||||| ||    ||| ||||  ||||||| ||||||||||||||||||||||||    
T  1418984 aaaaagaaataattgttgtgattctttcaatgaaatagctttacaaattgactgattaagtgattatacaaattga 1418909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 456
Target Start/End: Complemental strand, 15457564 - 15457501
Alignment:
Q  397 attgttgtgattcttt----aaaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||||||||||||||    |||||| ||||| ||||||| |||||||||||||||||||||||    
T  15457564 attgttgtgattctttcaataaaatagcttttcaaattgactgattaagtgattatacaaattg 15457501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 18916075 - 18916117
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  18916075 aaatagcttttcaaattgattgattaagtgattatacaaattg 18916117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 38985698 - 38985772
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| ||    ||| ||||| ||||||||||||||| |||||||||||||||    
T  38985698 aaaaagaaatgattgttgtgattctttcaatgaaatagcttttcaaattgattgattaaatgattatacaaattg 38985772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 39081472 - 39081398
Alignment:
Q  387 aaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||| ||||||||| ||||||| ||    ||| ||||| ||||||| ||||||||||||||||||||||||    
T  39081472 aaaagaaataattgttgtaattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattga 39081398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 18172929 - 18173002
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||  ||||||||||||||||     ||||| ||||| ||||||| ||||||||||||||||||||||    
T  18172929 aaaaagaaatgattgttgtgattctttcgatgaaatagcttttcaaattgagtgattaagtgattatacaaatt 18173002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 38599438 - 38599402
Alignment:
Q  421 tttttaaattgattgattaagtgattatacaaattga 457  Q
    |||| ||||||||||||||||||||||||||||||||    
T  38599438 ttttcaaattgattgattaagtgattatacaaattga 38599402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 12072772 - 12072723
Alignment:
Q  184 aaacagaaagtttccttttaacattattatagcaaatatattcttaacagaat 236  Q
    |||||||||||||||||||||||   |||||||| ||||||||||||| ||||    
T  12072772 aaacagaaagtttccttttaaca---ttatagcatatatattcttaacggaat 12072723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 21747259 - 21747293
Alignment:
Q  422 ttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||||||||| |||||||||||||||||||||||    
T  21747259 ttttaaattgactgattaagtgattatacaaattg 21747293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 6530723 - 6530661
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||| ||||| ||||||| ||||||||||||||||||||||    
T  6530723 attgttgtgattctttcaatgaaataccttttcaaattgactgattaagtgattatacaaatt 6530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 13020487 - 13020425
Alignment:
Q  397 attgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||||||    ||| ||||  ||||||| ||||||||||||||||||||||    
T  13020487 attgttgtgattctttaaatgaaatagctttccaaattgactgattaagtgattatacaaatt 13020425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 19367440 - 19367481
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  19367440 aaatagcttttcaaattgactgattaagtgattatacaaatt 19367481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 25222387 - 25222325
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | |||||||||| |||||||| | ||||||||||||||||||||    
T  25222387 attgttgtgattctttcaatgaaataactttctaaattgactaattaagtgattatacaaatt 25222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 306 - 539
Target Start/End: Original strand, 4207268 - 4207500
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtg 405  Q
    |||||| || |||||||||||| ||||||||||||||||||| |||||| ||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  4207268 cagggttgtccctataaaattggaggctcgactctcataata-aaatagacccttaataaaataaaaacacaattctgcaaaaaagaaaggattgttgtg 4207366  T
Q  406 attctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtct 505  Q
    ||||||| ||||| ||||  ||||||| ||||||||||||||||||||||| |||| |||||| |||| || | ||||||||||| |||||||||||||     
T  4207367 attctttgaaatatctttccaaattgaatgattaagtgattatacaaattggatggtttgatagcattgaattcttgtccaaaaaggagaactagagtcg 4207466  T
Q  506 aaaggatagatgtatgttggattggtggtggtta 539  Q
    ||| |||| ||| ||||| |||||||||||||||    
T  4207467 aaatgatatatgcatgttcgattggtggtggtta 4207500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 307 - 523
Target Start/End: Complemental strand, 21660644 - 21660428
Alignment:
Q  307 agggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtga 406  Q
    |||||||||  ||| |||||  || |||| ||||||||||| ||||| || ||||||||||||||||||||||| ||  |||||||||| ||| ||||||    
T  21660644 agggtcgtttttatgaaattagagactcggctctcataataaaaataagcatctaataaaataaaaacacaattatgcgaaaaagaaaggattattgtga 21660545  T
Q  407 ttctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| |||  |||| |||||| ||||||| | ||||||||||| ||||| || ||||||    
T  21660544 ttctttgaaataattttttaaattgattgattaagtgattatacagatttgatggtttgatagcattaaattcttgtccaaaaaggagaaatatagtcta 21660445  T
Q  507 aaggatagatgtatgtt 523  Q
    |||||||||||||||||    
T  21660444 aaggatagatgtatgtt 21660428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 306 - 539
Target Start/End: Original strand, 35202631 - 35202864
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtg 405  Q
    ||||||||| ||||| |||||| | | |||  |||||||||| |||||||||  ||||||| |||||||||| ||||| ||||||||||| |||||||||    
T  35202631 cagggtcgtccctatgaaattggatgttcggttctcataataaaaataggcccttaataaattaaaaacacagttctgcaaaaaagaaagtattgttgtg 35202730  T
Q  406 attctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtct 505  Q
    ||| ||| ||||  ||||  ||||||| ||||||||| ||||||||||||| |||| ||||||| |||||| | || |||||||| || ||||| |||||    
T  35202731 attttttgaaattgctttcaaaattgactgattaagtaattatacaaattggatggtttgataaaattaaattcttatccaaaaaggataactaaagtct 35202830  T
Q  506 aaaggatagatgtatgttggattggtggtggtta 539  Q
    | |||||||||| |||||||||||||||||||||    
T  35202831 ataggatagatgaatgttggattggtggtggtta 35202864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 508
Target Start/End: Original strand, 42009251 - 42009379
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaactt 479  Q
    ||||||||| ||||||||||||||||| ||    ||||||||||||||||| ||||||||||||||||||||||||   ||| |||||| ||| ||| ||    
T  42009251 aaaaagaaataattgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaattt 42009350  T
Q  480 ttgtccaaaaaagagaactagagtctaaa 508  Q
     |||||| |||  ||||||| ||||||||    
T  42009351 atgtccagaaagtagaactaaagtctaaa 42009379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 27303262 - 27303187
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||||||| ||    ||| ||||| ||||||||||||||||||||||||||||||||    
T  27303262 aaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattga 27303187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 46904818 - 46904742
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||||| ||||||||||||||||| ||    |||  |||||||||||| ||||||||||||||||||||||||    
T  46904818 aaaaaagaaataattgttgtgattctttcaatgaaatagttttttaaattgactgattaagtgattatacaaattga 46904742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 29387775 - 29387816
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  29387775 aaataacttttcaaattgattgattaagtgattatacaaatt 29387816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 502
Target Start/End: Complemental strand, 54430595 - 54430505
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaacttttgtccaaaaaagagaactagag 502  Q
    ||||||||||| ||||||| ||||||||||||||||||||||  |  ||| |||||||||| | | || ||| |||||| |||||||||||    
T  54430595 aaataacttttcaaattgactgattaagtgattatacaaattaggggtggtttgataacatcagatttatgtacaaaaaggagaactagag 54430505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 7767138 - 7767063
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||| ||| ||||||||||||||||| ||    ||| ||||| ||||||| ||||||||||||||||||||||||    
T  7767138 aaaaaaaaataattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattga 7767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 36538175 - 36538250
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||||||| ||    |||  |||| ||||||| ||||||||||||||||||||||||    
T  36538175 aaaaagaaataattgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattga 36538250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 43905864 - 43905907
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  43905864 aaataacttttcaaattgactgattgagtgattatacaaattga 43905907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 50677303 - 50677378
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||| ||| ||    |||  |||| ||||||| ||||||||||||||||||||||||    
T  50677303 aaaaagaaataattgttgtgattgtttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattga 50677378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 8364236 - 8364174
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||||||||  ||||||| ||||||||||||||||||||||    
T  8364236 attgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattatacaaatt 8364174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 13401502 - 13401461
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  13401502 aaatagcttttcaaattgactgattaagtgattatacaaatt 13401461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Original strand, 23164605 - 23164634
Alignment:
Q  426 aaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||||||||||||||||    
T  23164605 aaattgattgattaagtgattatacaaatt 23164634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 24252663 - 24252622
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||  ||||||| ||||||||||||||||||||||    
T  24252663 aaataactttccaaattgactgattaagtgattatacaaatt 24252622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 51939577 - 51939618
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  51939577 aaatagcttttcaaattgactgattaagtgattatacaaatt 51939618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 312 - 539
Target Start/End: Complemental strand, 31235056 - 31234829
Alignment:
Q  312 cgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctt 411  Q
    ||||||||| |||||| |||||||||| | |||||| |||||||| | ||||||||||||||||||||||||  ||||| | |  ||| |||||||||||    
T  31235056 cgttcctatgaaattgtaggctcgacttttataataaaaataggcatgtaataaaataaaaacacaattctgcgaaaaatataacattattgtgattctt 31234957  T
Q  412 taaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaagga 511  Q
    | ||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| |||| || | ||||| |||||  |||||||||||||||||||    
T  31234956 tgaaatagcttttcaaattgattgattaagtgattatacaaattggatggtttgatagcattgaattcttgtctaaaaagtagaactagagtctaaagga 31234857  T
Q  512 tagatgtatgttggattggtggtggtta 539  Q
    || |||||||||||||| ||||||||||    
T  31234856 taaatgtatgttggatttgtggtggtta 31234829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 313 - 539
Target Start/End: Complemental strand, 31244191 - 31243966
Alignment:
Q  313 gttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattcttt 412  Q
    |||||||| |||||| |||||||||| |||||||| |||||||| | ||||||||||||||||||||||||| ||||| | |  ||| ||||||||||||    
T  31244191 gttcctatgaaattgtaggctcgactttcataataaaaataggcatgtaataaaataaaaacacaattctgtgaaaaatataacattattgtgattcttt 31244092  T
Q  413 aaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggat 512  Q
     ||||| ||||| || |||||||||||||||||||||||||||| |||| |||||| |||| || | ||||| |||||  ||||||||||||||||||||    
T  31244091 gaaatagcttttcaa-ttgattgattaagtgattatacaaattggatggtttgatagcattgaattcttgtctaaaaagtagaactagagtctaaaggat 31243993  T
Q  513 agatgtatgttggattggtggtggtta 539  Q
    | |||||||||||||| ||||||||||    
T  31243992 aaatgtatgttggatttgtggtggtta 31243966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 343 - 539
Target Start/End: Complemental strand, 32056173 - 32055979
Alignment:
Q  343 taatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagt 442  Q
    ||||| ||||||| | ||||||||||||||||||||||||| ||||||||||| ||| || |||||  ||||| || ||||||||||||| |||||||||    
T  32056173 taataaaaataggtccctaataaaataaaaacacaattctgcaaaaaagaaaggattattatgattaattaaa-tagctttttaaattgagtgattaagt 32056075  T
Q  443 gattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    |||||||||| ||| |||| ||||||||||| || | |||| |||||| |||||||||||| || |||||||||| |||||| || |||||||||||    
T  32056074 gattatacaa-ttggatggtttgataacattgaattcttgttcaaaaatgagaactagagtttagaggatagatggatgttgaataggtggtggtta 32055979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 336 - 539
Target Start/End: Original strand, 15035725 - 15035927
Alignment:
Q  336 actctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattg 435  Q
    ||||| |||||| ||||||| | |||||||||||||||||||| | |   |||||||||  |||||||||||||||| ||  | ||||| ||||||| ||    
T  15035725 actctaataataaaaataggtccctaataaaataaaaacacaaatattcgaaaaagaaa--attgttgtgattctttgaatcagcttttcaaattgactg 15035822  T
Q  436 attaagtgattatacaaa-ttgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggt 534  Q
     |||| |||||||||||| |||||||| |||||| |||| || | ||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||    
T  15035823 gttaaatgattatacaaaattgaatggtttgatagcattgaattcttgtccaaaaaggagaactaaagtctataggatagatgaatgttggattggtggt 15035922  T
Q  535 ggtta 539  Q
    |||||    
T  15035923 ggtta 15035927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 306 - 539
Target Start/End: Complemental strand, 1327744 - 1327511
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtg 405  Q
    ||||||||||  ||| |||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| |||| ||  ||||||| |  ||| |||||    
T  1327744 cagggtcgtttttatgaaattggaggctcgactctcataatacaaatatgcccctaataaaataaaaacaaaattatgcgaaaaagataatattattgtg 1327645  T
Q  406 attctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaac-tagagtc 504  Q
    ||| ||| |||||  ||| |||||||||||||||||||||||||||||||| || |  ||||| |||| || | ||||||||||| ||||||   | ||     
T  1327644 attatttgaaatagttttctaaattgattgattaagtgattatacaaattggat-gaatgatagcattgaattattgtccaaaaaggagaacagggggta 1327546  T
Q  505 taaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||| ||||||||||||| |||| ||||||||||    
T  1327545 taaagaatagatgtatgttagatttgtggtggtta 1327511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 1722125 - 1722242
Alignment:
Q  303 tatcagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctg-taaaaaagaaagaattgt 401  Q
    |||||||||||| ||||| |||||  || || ||||||||||||| ||||||| |||||||||||||||||||||||| ||  ||||||||||| || ||    
T  1722125 tatcagggtcgtccctatgaaattagagacttgactctcataataaaaataggtctctaataaaataaaaacacaattttgcaaaaaaagaaaggatcgt 1722224  T
Q  402 tgtgattctttaaaataa 419  Q
    ||| ||||||| ||||||    
T  1722225 tgtcattctttgaaataa 1722242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 388 - 508
Target Start/End: Original strand, 3748559 - 3748685
Alignment:
Q  388 aaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattgaatggc---ttgataacattaaacttt 480  Q
    ||||||| ||||||||||||||||| ||    ||| ||||| ||||||||||||||||||||||||||||||| |||||   |||||| ||| ||| ||     
T  3748559 aaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattg-atggcggtttgatagcatcaaattta 3748657  T
Q  481 tgtccaaaaaagagaactagagtctaaa 508  Q
    ||||||||||  ||||||||| ||||||    
T  3748658 tgtccaaaaagtagaactagaatctaaa 3748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 6360823 - 6360762
Alignment:
Q  397 attgttgtgattctttaaa---ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||| ||   ||||||||| ||||||| ||||||||||||||||||||||    
T  6360823 attgttgtgattctttcaatgaataacttttcaaattgactgattaagtgattatacaaatt 6360762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 1690622 - 1690696
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| ||    |||| |||| |||||||||||| ||||||||||||||||||    
T  1690622 aaaaagaaatgattgttgtgattctttcaatgaaataaattttcaaattgattgatcaagtgattatacaaattg 1690696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 539
Target Start/End: Original strand, 1722243 - 1722296
Alignment:
Q  486 aaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||| |||||| ||||||||||||||||||| || |||||||||| |||||||    
T  1722243 aaaaaggagaaccagagtctaaaggatagatggatattggattggtagtggtta 1722296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 7525166 - 7525228
Alignment:
Q  397 attgttgtgattcttt----aaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||    |||||||||||  ||||||| ||||||||||||||||||||||    
T  7525166 attgttgtgattctttcaataaaataactttccaaattgactgattaagtgattatacaaatt 7525228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 28847698 - 28847757
Alignment:
Q  313 gttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaa 372  Q
    |||||||  ||||||||||||||||||||||| || ||||||||  ||||||||| ||||    
T  28847698 gttcctacgaaattgaaggctcgactctcatagtaaaaataggctcctaataaaaaaaaa 28847757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 455
Target Start/End: Complemental strand, 2618420 - 2618357
Alignment:
Q  396 aattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||| ||    ||| ||||| ||||||| ||||||||||||||||||||||    
T  2618420 aattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 2618357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 393
Target Start/End: Complemental strand, 10670138 - 10670053
Alignment:
Q  307 agggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaa 393  Q
    |||| ||| ||||| ||| || |||||||||||||||| || |||||||||  |||||||| |||||||||||| |  |||||||||    
T  10670138 agggccgtccctatgaaactggaggctcgactctcatagtaaaaataggcccttaataaaa-aaaaacacaatttttaaaaaaagaa 10670053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 57752 - 57690
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||| |||| |||||||| ||||||||||||||||||||||    
T  57752 attgttgtgattctttgaatgaaatagctttctaaattgactgattaagtgattatacaaatt 57690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 628116 - 628157
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  628116 aaatagcttttcaaattgactgattaagtgattatacaaatt 628157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 1112424 - 1112493
Alignment:
Q  312 cgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaa-acacaatt 380  Q
    ||||||||||||| || ||||||||||||| || || ||||||| || |||||||| |||| ||||||||    
T  1112424 cgttcctataaaactggaggctcgactctcgtagtaaaaataggtctttaataaaaaaaaatacacaatt 1112493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 2356637 - 2356693
Alignment:
Q  323 aattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||| ||||||| |||||||| || ||||||||| ||||||||||||||||| ||||    
T  2356637 aattggaggctcggctctcata-tataaataggcccctaataaaataaaaacataatt 2356693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 12614737 - 12614778
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  12614737 aaatagcttttcaaattgactgattaagtgattatacaaatt 12614778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 29401204 - 29401142
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||||||||| ||||||| ||||||||||||||||| ||||    
T  29401204 attgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattatactaatt 29401142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 30915357 - 30915430
Alignment:
Q  388 aaagaaagaattgttgtgattctttaaaataa----ctttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||  |||||||||||||||| || |||    ||||| ||||||| ||||||||| ||||||||||||||    
T  30915357 aaagaaatgattgttgtgattctttcaattaaatagcttttcaaattgactgattaagtaattatacaaattga 30915430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 316 - 539
Target Start/End: Original strand, 2445699 - 2445920
Alignment:
Q  316 cctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctttaaa 415  Q
    |||||||||||| | | | ||||||||| ||| |||||||  |||||| ||||||||||  |||| |   ||||| ||| ||||| ||||||||||| ||    
T  2445699 cctataaaattggatgatggactctcattataaaaataggtttctaatcaaataaaaactaaattatacgaaaaataaataattggtgtgattctttgaa 2445798  T
Q  416 ataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggataga 515  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||| |||||| ||| ||| | ||||  ||||||  ||||||||||||| ||||||||    
T  2445799 ataaccttttaatttgatagattaagtgattatacaaattgaatggtttgatagcatcaaattcttgt--aaaaaaaggaactagagtctagaggataga 2445896  T
Q  516 tgtatgttggattggtggtggtta 539  Q
    |||| |||||||||||||||||||    
T  2445897 tgtaagttggattggtggtggtta 2445920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 18895386 - 18895459
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||| |||| ||||||||||||||||| ||    ||||||||||||||||| ||||||| ||||||||||||||    
T  18895386 aaaaggaaataattgttgtgattctttcaatgaaataactttttaaattgactgattaattgattatacaaatt 18895459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 503
Target Start/End: Complemental strand, 9479202 - 9479079
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaactt 479  Q
    ||||||||| ||||||||||||||||| ||    |||  |||||||||||| ||||||||| ||||||||||||||   ||| |||||| ||| ||| ||    
T  9479202 aaaaagaaataattgttgtgattctttcaacgaaatagttttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaattt 9479103  T
Q  480 ttgtccaaaaaagagaactagagt 503  Q
     |||||| |||  |||||||||||    
T  9479102 atgtccagaaagtagaactagagt 9479079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 26633438 - 26633363
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||||  |||||||||||||||| ||    ||| ||||| ||||||| ||||||||||||||||||||||||    
T  26633438 aaaaagaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattga 26633363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 503
Target Start/End: Original strand, 40738010 - 40738103
Alignment:
Q  412 taaaataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaacttttgtccaaaaaagagaactagagt 503  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||   ||| |||||| ||| ||| || |||| |||||  |||||||||||    
T  40738010 taaaatagctttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtcaaaaaagtagaactagagt 40738103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 4100011 - 4099970
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  4100011 aaatagcttttcaaattgattgattaagtgattatacaaatt 4099970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 8358294 - 8358356
Alignment:
Q  397 attgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||| ||    ||||||||||||||||| |||||||||||||||| |||||    
T  8358294 attgttgtgattctttcaatgagataactttttaaattgactgattaagtgattatataaatt 8358356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 25859242 - 25859186
Alignment:
Q  323 aattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||| |||||||||||||||| || ||||||||| ||||||||||||||||| ||||    
T  25859242 aattggaggctcgactctcata-taaaaataggcccctaataaaataaaaacataatt 25859186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 44894029 - 44894091
Alignment:
Q  397 attgttgtgattcttt----aaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||    |||||| ||||  ||||||||||||||||||||||||||||||    
T  44894029 attgttgtgattctttcaataaaatagctttccaaattgattgattaagtgattatacaaatt 44894091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 18015571 - 18015644
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||| ||||||||||||||||| ||    ||| ||||  ||||||||||||||||||||||||||||||    
T  18015571 aaaaaaaaataattgttgtgattctttcaatgaaatagctttccaaattgattgattaagtgattatacaaatt 18015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 30739166 - 30739122
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattgaa 458  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||    
T  30739166 aaataacttttcaaattgactgattaagtgattataaaaattgaa 30739122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 508
Target Start/End: Complemental strand, 32956850 - 32956722
Alignment:
Q  386 aaaaagaaagaattgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaactt 479  Q
    |||||||||  |||||||||||||||    | |||||||||| |||||||| ||||||| |||||||| |||||  |  ||| |||||| ||| | | ||    
T  32956850 aaaaagaaatcattgttgtgattctttcaatgaaataactttataaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagattt 32956751  T
Q  480 ttgtccaaaaaagagaactagagtctaaa 508  Q
     |||||| ||| |||||||||||||||||    
T  32956750 atgtccagaaaggagaactagagtctaaa 32956722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 26282563 - 26282605
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||    
T  26282563 aaatagcttttcaaattgactgattaagtgattatacaaattg 26282605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 40001717 - 40001759
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||    
T  40001717 aaatagcttttcaaattgactgattaagtgattatacaaattg 40001759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 1366084 - 1366010
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  ||||||||||||||||     ||||||||||| ||||||| ||||||||| ||||||| |||||    
T  1366084 aaaaagaaatgattgttgtgattctttctatgaaataacttttcaaattgactgattaagtcattataccaattg 1366010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Original strand, 6380117 - 6380146
Alignment:
Q  426 aaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||||||||||||||||    
T  6380117 aaattgattgattaagtgattatacaaatt 6380146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 11672650 - 11672588
Alignment:
Q  397 attgttgtgattct----ttaaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||    || ||||||||||  ||||||| ||||||||||||||||||||||    
T  11672650 attgttgtgattctttcattgaaataactttccaaattgactgattaagtgattatacaaatt 11672588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 36438379 - 36438415
Alignment:
Q  421 tttttaaattgattgattaagtgattatacaaattga 457  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  36438379 ttttcaaattgactgattaagtgattatacaaattga 36438415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 374 - 539
Target Start/End: Original strand, 524830 - 524994
Alignment:
Q  374 cacaattctgtaaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacatt 473  Q
    ||||||||||  |||||||||| ||  ||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  |||| |||| | ||||    
T  524830 cacaattctgcgaaaaagaaaggataattgtgattctttaaaatagttttttaaattgattgattaagtgattata-aaattagatggtttgagagcatt 524928  T
Q  474 aaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
     || | || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  524929 gaattcttttccaaaaaggagaactagagtctaaaggatagatgtgtgttggattggtggtggtta 524994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 510
Target Start/End: Original strand, 37029026 - 37029153
Alignment:
Q  387 aaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataac----attaaacttttg 482  Q
    ||||||||| ||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||  |||||| |    ||| || |||      
T  37029026 aaaagaaaggattattgtaattctttgaaatagctttttaaattgattgattaagtgattatacaaattggatgatttgatagcaagaattgaattttga 37029125  T
Q  483 tccaaaaaagagaactagagtctaaagg 510  Q
    || ||||| |||||||||||||||||||    
T  37029126 tctaaaaaggagaactagagtctaaagg 37029153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 508
Target Start/End: Complemental strand, 13423928 - 13423811
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaacttttgtccaaaaa 490  Q
    |||||||||||||||    | ||||| |||| |||||||||||||||||||||||||||||||  |||||| ||||||  ||   | || ||| ||||||    
T  13423928 attgttgtgattctttcaatgaaatagctttctaaattgattgattaagtgattatacaaattaggaatggtttgataggatccgatttatgtacaaaaa 13423829  T
Q  491 agagaactagagtctaaa 508  Q
    ||||||||||||||||||    
T  13423828 agagaactagagtctaaa 13423811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 29156265 - 29156192
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||  |||||||||||||||| ||    ||||||||||||||||| ||||||||||||||||||||||    
T  29156265 aaaaagaaatgattgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaatt 29156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 16515600 - 16515524
Alignment:
Q  385 aaaaaagaaagaattgttgtgattcttt----aaaataactttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||||| |||||||||||||||||    ||||||| |||| |||||||||||||||||||||||  |||||||    
T  16515600 aaaaaagaaataattgttgtgattctttcaataaaataatttttcaaattgattgattaagtgattattaaaattga 16515524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 7390389 - 7390460
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaa 453  Q
    ||||||||| |||||| ||||||||||     ||||||||||||||||||| ||||||||||||||||||||    
T  7390389 aaaaagaaataattgtcgtgattctttcgatgaaataactttttaaattgactgattaagtgattatacaaa 7390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 17513925 - 17513999
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaa----aataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| |    |||||||||| ||||||| |||||||||||||||||||||||    
T  17513925 aaaaagaaatgattgttgtgattctttcagtgaaataacttttcaaattgactgattaagtgattatacaaattg 17513999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 506
Target Start/End: Complemental strand, 138187 - 138093
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||||   ||| |||||| ||| ||| || ||||| ||||  ||||||||||||||    
T  138187 aaatagcttttcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccgaaaagtagaactagagtcta 138093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 931450 - 931381
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  ||| |||||||||||| || || |||| |||||||| |||||||||||||||||||||||    
T  931450 aaaaagaaatgattattgtgattctttcaa-tagctttctaaattgactgattaagtgattatacaaattg 931381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 35147220 - 35147146
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||| ||| |||||| ||||  |||||||||||| | | || |||||||||||| |||||||||||||||||||    
T  35147220 cagggccgtccctatagaattagaggctcgactctaacattaaaaataggcctctcataaaataaaaacacaatt 35147146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 13656274 - 13656212
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||||||||| ||||||| ||||||||||||||||||||||    
T  13656274 attgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattatacaaatt 13656212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 19099335 - 19099376
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  19099335 aaatagctttttaaattgactgattaagtgattatacaaatt 19099376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 43511693 - 43511619
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  ||||||||||||||||     ||||| ||||| ||||||| |||||||||||||||||||||||    
T  43511693 aaaaagaaatgattgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaattg 43511619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 33281717 - 33281677
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaat 454  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  33281717 aaataactttttaaattgactaattaagtgattatacaaat 33281677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 457
Target Start/End: Complemental strand, 5829419 - 5829385
Alignment:
Q  423 tttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||||| ||||||||||||||||||||||||    
T  5829419 tttaaattgactgattaagtgattatacaaattga 5829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 10591294 - 10591336
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||||||||| ||||| | |||||||||||||||||||||||    
T  10591294 aaataacttttcaaattaactgattaagtgattatacaaattg 10591336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 11245559 - 11245485
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||||||||||||| |||||| ||| ||  |||||||| || |||| |||||||| ||||| ||| ||||||||    
T  11245559 cagggtcgttcctatgaaattggaggttcagctctcatagtaaaaattggcctctagtaaaaaaaacacacaatt 11245485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 7225698 - 7225657
Alignment:
Q  339 ctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  7225698 ctcataataaaaataggcccctagtaaaataaaaacacaatt 7225657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 455
Target Start/End: Complemental strand, 13474669 - 13474632
Alignment:
Q  418 aactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  13474669 aacttttcaaattgactgattaagtgattatacaaatt 13474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 20976060 - 20975986
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| ||    ||| ||||| ||||||| ||||||| |||||||||||||||    
T  20976060 aaaaagaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaaatgattatacaaattg 20975986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 17535687 - 17535755
Alignment:
Q  305 tcagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaa 373  Q
    |||||||||| ||||| | |||| ||| ||||||||||||||| |||||| || |  ||||||||||||    
T  17535687 tcagggtcgtccctatgagattggaggttcgactctcataataaaaatagaccccatataaaataaaaa 17535755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 18873532 - 18873459
Alignment:
Q  386 aaaaagaaagaattgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||| ||||||||||||||||    | ||||| ||||| ||||||  |||||||||| |||||||||||    
T  18873532 aaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattggctgattaagtggttatacaaatt 18873459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 22868211 - 22868163
Alignment:
Q  307 agggtcgttcctataaaattgaaggctcgactctcataatagaaatagg 355  Q
    |||||||| ||||| ||| ||||||||| |||||||||||| |||||||    
T  22868211 agggtcgtccctatgaaactgaaggctcaactctcataataaaaatagg 22868163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 7773586 - 7773491
Alignment:
Q  444 attatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||||||||||| |||| |||||| ||| ||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  7773586 attatacaaattggatggtttgatagcataaaattcttgtccaaaaaggagaactagagtataaaggatagatgtatgttggattggtggtggtta 7773491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 7790226 - 7790131
Alignment:
Q  444 attatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||||||||||| |||| ||||||  || ||| ||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7790226 attatacaaattggatggtttgatagaataaaatttttgtccacaaaggagaactacagtataaaggatagatgtatgttggattggtggtggtta 7790131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 444 - 539
Target Start/End: Complemental strand, 7810812 - 7810717
Alignment:
Q  444 attatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||||||||||| |||| ||||||  || ||| ||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7810812 attatacaaattggatggtttgatagaataaaatttttgtccacaaaggagaactacagtataaaggatagatgtatgttggattggtggtggtta 7810717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 315 - 456
Target Start/End: Original strand, 5971679 - 5971819
Alignment:
Q  315 tcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctttaa 414  Q
    |||||| |||||| ||||  ||||||||||||| |||||  ||| |||||||||||||  | |||| || |||| ||||   ||||||||||||||||||    
T  5971679 tcctatgaaattggaggcctgactctcataataaaaataatcct-taataaaataaaataaaaattatgcaaaagagaactgattgttgtgattctttaa 5971777  T
Q  415 aataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||| ||||||||||||| |||||||||||| ||| ||||||    
T  5971778 aatagctttttaaattgactgattaagtgatgatagaaattg 5971819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 7773674 - 7773605
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaat 454  Q
    |||||| |||||||| |||||||||||| |||||| |||||||||| ||| | |||||||||||||||||    
T  7773674 aaaaaacaaagaattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 7773605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 7790314 - 7790245
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaat 454  Q
    |||||| |||| ||| |||||||||||| |||||| |||||||||| ||| | |||||||||||||||||    
T  7790314 aaaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 7790245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 7810900 - 7810831
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaat 454  Q
    |||||| |||| ||| |||||||||||| |||||| |||||||||| ||| | |||||||||||||||||    
T  7810900 aaaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 7810831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 506
Target Start/End: Original strand, 42951788 - 42951884
Alignment:
Q  412 taaaataactttttaaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||  || ||| ||||||  |||  | || ||| |||||| |||||||||||||||    
T  42951788 taaaataacttttcaaattgactgattaagtgattatacaaattaggagtggtttgataggattcgatttatgtacaaaaatgagaactagagtcta 42951884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 43968091 - 43968132
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  43968091 aaataacttttcaaattgattgattaagtgattatacaaatt 43968132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 3628736 - 3628809
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||| ||||||||||||||||| ||    ||||||||| ||||||| |||||| |||||||||||||||    
T  3628736 aaaaagaaataattgttgtgattctttcaatgaaataacttttcaaattgactgattatgtgattatacaaatt 3628809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 506
Target Start/End: Original strand, 32098166 - 32098293
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaact 478  Q
    |||||||||| ||||||||||||||||| ||    |||  |||  ||||||| |||||||||||| |||||||||  || ||| |||||| ||| ||| |    
T  32098166 aaaaaagaaataattgttgtgattctttcaatgaaatagttttccaaattgactgattaagtgatcatacaaattaagagtggtttgatagcatcaaatt 32098265  T
Q  479 tttgtccaaaaaagagaactagagtcta 506  Q
    | |||||||||| || ||||||||||||    
T  32098266 tatgtccaaaaaggataactagagtcta 32098293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 12531634 - 12531560
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| ||    |||  |||||||||||| |||||||||||||||||||||||    
T  12531634 aaaaagaaatgattgttgtgattctttcaatgaaatagatttttaaattgactgattaagtgattatacaaattg 12531560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Original strand, 34523940 - 34524014
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  |||||||||||||||| ||    ||| ||||| ||||||| |||||||||||||||||||||||    
T  34523940 aaaaagaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattg 34524014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 4837180 - 4837109
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaa 378  Q
    ||||| ||| ||||| ||||||||| | ||||||||| |||| ||||||||| || |||||||||||||||||    
T  4837180 cagggccgtccctatcaaattgaagacccgactctcaaaata-aaataggccccttataaaataaaaacacaa 4837109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 4842625 - 4842554
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaa 378  Q
    ||||| ||| ||||| ||||||||| | ||||||||| |||| ||||||||| || |||||||||||||||||    
T  4842625 cagggccgtccctatcaaattgaagacccgactctcaaaata-aaataggccccttataaaataaaaacacaa 4842554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 33452867 - 33452792
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttt-----aaaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  ||||||||||||||||     |||||||||||| ||||||||| ||| |||||||||| ||||||    
T  33452867 aaaaagaaatgattgttgtgattctttttattaaaataacttttcaaattgattaattgagtgattatataaattg 33452792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 3471664 - 3471602
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||| ||||| ||||||| ||||||||||||||||||||||    
T  3471664 attgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 3471602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 7858149 - 7858087
Alignment:
Q  397 attgttgtgattctttaaaa----taactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||||||     |||||||  ||||||| ||||||||||||||||||||||    
T  7858149 attgttgtgattctttaaatgaattaactttccaaattgactgattaagtgattatacaaatt 7858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 8341173 - 8341229
Alignment:
Q  323 aattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||| ||||||| |||||||| || ||||||||| ||||||||||||||||| ||||    
T  8341173 aattggaggctcggctctcata-taaaaataggcccctaataaaataaaaacataatt 8341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 455
Target Start/End: Complemental strand, 27074609 - 27074576
Alignment:
Q  422 ttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||| ||||||||||||||||||||||    
T  27074609 ttttaaattgactgattaagtgattatacaaatt 27074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 456
Target Start/End: Original strand, 39697923 - 39698001
Alignment:
Q  382 tgtaaaaaagaaagaattgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||||||||||| ||||||||||||||||    | ||||| ||||| ||||||| | ||||| |||| ||||||||||    
T  39697923 tgtaaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgactaattaaatgatcatacaaattg 39698001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 42076145 - 42076108
Alignment:
Q  420 ctttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  42076145 cttttcaaattgattgattaagttattatacaaattga 42076108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 501
Target Start/End: Original strand, 32810262 - 32810459
Alignment:
Q  305 tcagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgt-aaaaaagaaagaattgttg 403  Q
    ||||||||||| |||| |||||| | ||||   |||||||||| ||||| |||  | ||||||||||||||||||| ||  ||||||||||| ||| ||     
T  32810262 tcagggtcgtttctatgaaattggaagctcatttctcataataaaaataagccctttataaaataaaaacacaattatgcgaaaaaagaaaggattatta 32810361  T
Q  404 tgattctttaaaataactttttaaattgattgattaagtgattatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactaga 501  Q
     |||||||| ||||| ||||| ||||||||||||||||||||||| ||||||  || | || ||| ||||||| | |||||||||||  |||||||||    
T  32810362 ggattctttgaaatagcttttcaaattgattgattaagtgattattcaaattagatagtttaatagcattaaattcttgtccaaaaagaagaactaga 32810459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 397 - 456
Target Start/End: Complemental strand, 5560547 - 5560484
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||||||||    | ||||||||||||||||||| |||||||||||||||||||||||    
T  5560547 attgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattg 5560484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 506
Target Start/End: Complemental strand, 15441333 - 15441239
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattgaa--tggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| |  ||| |||||| ||||| | || |||| | ||| |||||||||||||||    
T  15441333 aaatagctttataaattgagtgattaagtgattatacaaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtcta 15441239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 506
Target Start/End: Original strand, 27703562 - 27703644
Alignment:
Q  426 aaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaacttttgtccaaaaaagagaactagagtcta 506  Q
    ||||||| ||||||||||||||||||||||  |  ||| |||||| ||| ||| || ||| ||||||||||||||||||||||    
T  27703562 aaattgactgattaagtgattatacaaattgggggtggtttgatagcatcaaatttatgttcaaaaaagagaactagagtcta 27703644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 12884158 - 12884199
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||||||||||| ||||||||||||||||||||||    
T  12884158 aaatagctttttaaattgactgattaagtgattatacaaatt 12884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 12971481 - 12971407
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||||||  ||||||||||||||||     ||||| ||||| ||||||| |||||||||||||||||||||||    
T  12971481 aaaaagaaatgattgttgtgattctttcgatgaaatagcttttcaaattgactgattaagtgattatacaaattg 12971407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 52127551 - 52127625
Alignment:
Q  306 cagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaat-aaaataaaaacacaatt 380  Q
    |||||||||||||||| | ||| |||||||||||| || ||| | ||||||||||||| |||||||||||| ||||    
T  52127551 cagggtcgttcctatatatttggaggctcgactctaat-ataaagataggcctctaataaaaataaaaacataatt 52127625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 3907514 - 3907472
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    |||||| |||| ||||||||||||||| |||||||||||||||    
T  3907514 aaataatttttcaaattgattgattaaatgattatacaaattg 3907472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 7380298 - 7380360
Alignment:
Q  305 tcagggtcgttcctataaaattgaaggctcgactctcataatagaaataggcctctaataaaa 367  Q
    |||||| ||| |||||||||||| ||||||| ||||| || || ||||||||| |||||||||    
T  7380298 tcagggccgtccctataaaattggaggctcgtctctcgtagtaaaaataggcccctaataaaa 7380360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 18127936 - 18127999
Alignment:
Q  396 aattgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||    | ||||| ||||| ||||||| ||||||||||||||||||||||    
T  18127936 aattgttgtgattcttgcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 18127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 457
Target Start/End: Complemental strand, 24556881 - 24556806
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||||||||||    |||  |||| ||||||| | ||||||||||||| ||||||||    
T  24556881 aaaaagaaataattgttgtgattctttaaatgaaatagtttttcaaattgacttattaagtgattattcaaattga 24556806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 30004928 - 30004970
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattg 456  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||    
T  30004928 aaatagcttttcaaattaattgattaagtgattatacaaattg 30004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 455
Target Start/End: Original strand, 28885704 - 28885733
Alignment:
Q  426 aaattgattgattaagtgattatacaaatt 455  Q
    ||||||||||||||||||||||||||||||    
T  28885704 aaattgattgattaagtgattatacaaatt 28885733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 48660314 - 48660258
Alignment:
Q  323 aattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||| ||||||| |||||||| || ||||||||| ||||||||||||||||| ||||    
T  48660314 aattggaggctcggctctcata-taaaaataggcccctaataaaataaaaacataatt 48660258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 50552559 - 50552497
Alignment:
Q  397 attgttgtgattctt----taaaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||||||||    | ||||||||||| |||||||  |||||||||||||||||||||    
T  50552559 attgttgtgattctttcaatgaaataacttttcaaattgaccgattaagtgattatacaaatt 50552497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 508
Target Start/End: Complemental strand, 52055583 - 52055499
Alignment:
Q  426 aaattgattgattaagtgattatacaaatt--gaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaa 508  Q
    |||||||||||||||||||||||| |||||  | || | ||||||  |||| | || ||| |||||| |||||||||||||||||    
T  52055583 aaattgattgattaagtgattatataaattatggatagtttgatatgattagatttatgtacaaaaaggagaactagagtctaaa 52055499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Original strand, 44836749 - 44836785
Alignment:
Q  421 tttttaaattgattgattaagtgattatacaaattga 457  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  44836749 ttttcaaattgactgattaagtgattatacaaattga 44836785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 457
Target Start/End: Complemental strand, 50371170 - 50371134
Alignment:
Q  421 tttttaaattgattgattaagtgattatacaaattga 457  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  50371170 ttttcaaattgactgattaagtgattatacaaattga 50371134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 444 - 539
Target Start/End: Original strand, 1687 - 1782
Alignment:
Q  444 attatacaaattgaatggcttgataacattaaacttttgtccaaaaaagagaactagagtctaaaggatagatgtatgttggattggtggtggtta 539  Q
    ||||||||||||| |||| ||||||  || ||| ||||||||| ||| |||||||| | | |||||||||||||||||||||||||||||||||||    
T  1687 attatacaaattggatggtttgatagaataaaatttttgtccacaaaggagaactacaatataaaggatagatgtatgttggattggtggtggtta 1782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 1599 - 1668
Alignment:
Q  385 aaaaaagaaagaattgttgtgattctttaaaataactttttaaattgattgattaagtgattatacaaat 454  Q
    |||||| |||| ||| |||||||||||| |||||| |||||||||| ||| | |||||||||||||||||    
T  1599 aaaaaacaaaggattattgtgattctttgaaataattttttaaattaattcactaagtgattatacaaat 1668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 317 - 473
Target Start/End: Complemental strand, 41305838 - 41305688
Alignment:
Q  317 ctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaattctgtaaaaaagaaagaattgttgtgattctttaaaa 416  Q
    ||||||||||| ||||||||||||||||||| |||| || || |||||||||||||| |||||| ||  |||||||||  |||  ||||||||||| |||    
T  41305838 ctataaaattggaggctcgactctcataataaaaattggtct-taataaaataaaaa-acaattatgcgaaaaagaaaatattactgtgattctttgaaa 41305741  T
Q  417 taactttttaaattgattgattaagtgattatacaaattgaatggcttgataacatt 473  Q
    ||| ||| |||||||||||||    ||||||||||||||| |||  |||||| ||||    
T  41305740 taattttctaaattgattgat----tgattatacaaattggatgatttgatagcatt 41305688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 506
Target Start/End: Original strand, 43154777 - 43154903
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaactt 479  Q
    ||||| ||| ||||||||||||||||| ||    ||||||||||||||||| ||||||||||||||||||||||||   ||| |||||| ||| ||| ||    
T  43154777 aaaaataaataattgttgtgattcttttaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaattt 43154876  T
Q  480 ttgtccaaaaaagagaactagagtcta 506  Q
     ||||||||||  ||||||||| ||||    
T  43154877 atgtccaaaaagtagaactagaatcta 43154903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 457
Target Start/End: Original strand, 35653969 - 35654044
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattga 457  Q
    ||||||||| ||||||||||||||||| ||    ||| ||||| ||||||||||||||||||||||||||||||||    
T  35653969 aaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattga 35654044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 386 - 506
Target Start/End: Original strand, 21791536 - 21791662
Alignment:
Q  386 aaaaagaaagaattgttgtgattctttaaa----ataactttttaaattgattgattaagtgattatacaaattgaa--tggcttgataacattaaactt 479  Q
    |||||||||  |||||||||||||||| ||    ||||||||| ||||||| |||||||||||||||||| ||||||  ||| |||||  ||| ||| ||    
T  21791536 aaaaagaaatgattgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattatacacattgaaggtggtttgatggcatcaaattt 21791635  T
Q  480 ttgtccaaaaaagagaactagagtcta 506  Q
     ||| || ||| |||||||||||||||    
T  21791636 atgttcagaaaggagaactagagtcta 21791662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 22423760 - 22423633
Alignment:
Q  385 aaaaaagaaagaattgttgtgattcttt----aaaataactttttaaattgattgattaagtgattatacaaattga--atggcttgataacattaaact 478  Q
    |||||| ||| ||||||| |||||||||    ||||||  |||| |||||||||||||||||||| |||||||||||   ||| |||||| ||| ||| |    
T  22423760 aaaaaataaataattgttttgattctttcaataaaatagtttttcaaattgattgattaagtgatcatacaaattgatggtggtttgatagcatcaaatt 22423661  T
Q  479 tttgtccaaaaaagagaactagagtcta 506  Q
    | |||||| |||  ||||||||||||||    
T  22423660 tatgtccagaaagtagaactagagtcta 22423633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 455
Target Start/End: Original strand, 45172634 - 45172707
Alignment:
Q  386 aaaaagaaagaattgttgtgattcttta----aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    |||||||||  ||||||||||||||||     ||||| ||||| ||||||| ||||||||||||||||||||||    
T  45172634 aaaaagaaatgattgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaatt 45172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 10575544 - 10575587
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaattga 457  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||    
T  10575544 aaataactttctaaattgactgattaagtgattatacaagttga 10575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 28463609 - 28463650
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| || |||||||||||||||||||||||||||    
T  28463609 aaatagcttttcaacttgattgattaagtgattatacaaatt 28463650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 16061386 - 16061450
Alignment:
Q  316 cctataaaattgaaggctcgactctcataatagaaataggcctctaataaaataaaaacacaatt 380  Q
    ||||||||| || ||||||| ||||| || || ||||||||||||||||||| |||  |||||||    
T  16061386 cctataaaactggaggctcggctctcgtagtaaaaataggcctctaataaaaaaaacgcacaatt 16061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 16753 - 16712
Alignment:
Q  414 aaataactttttaaattgattgattaagtgattatacaaatt 455  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  16753 aaatagcttttcaaattgactgattaagtgattatacaaatt 16712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University