View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5268_high_7 (Length: 408)
Name: NF5268_high_7
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 11182825 - 11182569
Alignment:
| Q |
1 |
aaatattaaggttgagagagcaaatcattttatcttgttgttaannnnnnnnnctttctaaatctttcgtctatttggttgtaaacttttgtggtaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11182825 |
aaatattaaggttgagagagcaaatcattttatcttgttgttaatttttttttctttctaaatctttcgtctatttggttgtaaacttttgtggtaattt |
11182726 |
T |
|
| Q |
101 |
atgatttttatattgatgatggttttgggttgttagattatggattttcagttctagatgaagattaagaggtgttaggtatgaatatgaaagattttgg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11182725 |
atgatttttatgttgatgatggttttgggttgttagattatggattttcagttctagatgaagattaagaggtgttaggtatgaatatgaaagattttgg |
11182626 |
T |
|
| Q |
201 |
acaaagataatggagaaaatgttaagagtagtgtttgagaagatgaaaggattaaag |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11182625 |
acaaagataatggagaaaatgttaagagtagtgtttgagaagatgaaaggattaaag |
11182569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 309 - 393
Target Start/End: Complemental strand, 11182516 - 11182432
Alignment:
| Q |
309 |
ggagttaggccctctcacttattgattcgtcaactccttttccactcattttcctttttagtattgtgctcaattatgcaacttt |
393 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11182516 |
ggagttagtccctctcacttattgattcgtcaactccttttccactcattttcctttttagtattgtgctcaattatgcaacttt |
11182432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 31437818 - 31437905
Alignment:
| Q |
105 |
tttttatattgatgatggttttgggttgttagattatggattttcagttctagatgaagattaagaggtgttaggtatgaatatgaaa |
192 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
31437818 |
tttttatgttgactatggttttgggttgttggattatgaattttgagttgaagatgaagattaagaggtgttggatatgaatatgaaa |
31437905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 28727519 - 28727384
Alignment:
| Q |
58 |
ctaaatctttcgtctatttggttgtaaacttttgtggtaatttatgat-ttttatattgatgatggttttgggttgttagattatggattttcagttcta |
156 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||| || |||||| ||| |||||| ||||||| |||| |||||| ||||||| ||||| ||| | |
|
|
| T |
28727519 |
ctaaatctttgttctatttggttataaaattttatgaaaatttaagatattttatgttgatgagagtttcaagttgttggattatgaattttgagtggaa |
28727420 |
T |
|
| Q |
157 |
gatgaagattaagaggtgttaggtatgaatatgaaa |
192 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||| |
|
|
| T |
28727419 |
gttgaagattaagaggtgttgtatatgaatatgaaa |
28727384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 31409782 - 31409721
Alignment:
| Q |
87 |
ttttgtggtaatttatgatttttatattgatgatggttttgggttgttagattatggatttt |
148 |
Q |
| |
|
||||| || |||||| ||||||||| || | |||||||||||||||| ||||||||||||| |
|
|
| T |
31409782 |
ttttgaggaaatttaagatttttatgtttagaatggttttgggttgttggattatggatttt |
31409721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University