View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5268_low_10 (Length: 354)
Name: NF5268_low_10
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 5048953 - 5049289
Alignment:
| Q |
1 |
gaaatatgcacctatagcttacaataatatggaatactgaattatacctgaagctcacttgaatgatttgaggctgctgcacttggttgaatattttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5048953 |
gaaatatgcacctatagcttacaataatatggaatactgaattatacctgaagctcacttgaatgatttgaggctgctgcacttggttgaatattttcaa |
5049052 |
T |
|
| Q |
101 |
actcgaaaaaagagatgaaaatagaatcaagaaggaaaagacaacccaacaatccaaacatgagaacaatagttctaatgttcttttttccaacatagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049053 |
actcgaaaaaagagatgaaaatagaatcaagaaggaaaagacaacccaacaatccaaacatgagaacaatagttctaatgttcttttttccaacatagaa |
5049152 |
T |
|
| Q |
201 |
tcccttaatagaattgtactttgaagaatcatttttcagaccatgtagcaacaaagttttcgaatgccaacgacaatcaaccgctgtcatcctcttccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049153 |
tcccttaatagaattgtactttgaagaatcatttttcagaccatgtagcaacaaagttttcgaatgccaacgacaatcaaccgctgtcatcctcttccat |
5049252 |
T |
|
| Q |
301 |
gaaggtggatcattgcttgttatcttgtaatctttat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049253 |
gaaggtggatcattgcttgttatcttgtaatctttat |
5049289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University