View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_low_11 (Length: 351)

Name: NF5268_low_11
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_low_11
NF5268_low_11
[»] chr8 (3 HSPs)
chr8 (22-335)||(44087807-44088120)
chr8 (22-335)||(44066989-44067302)
chr8 (69-335)||(44092537-44092803)
[»] scaffold0618 (1 HSPs)
scaffold0618 (69-335)||(7108-7374)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 44088120 - 44087807
Alignment:
Q  22 ttcaagtcttctccactatacatcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088120 ttcaagtcttctccactatacatcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaag 44088021  T
Q  122 aatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44088020 aatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagc 44087921  T
Q  222 accaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaaga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44087920 accaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaaga 44087821  T
Q  322 ttacttttcataac 335  Q
    ||||||||||||||    
T  44087820 ttacttttcataac 44087807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 44066989 - 44067302
Alignment:
Q  22 ttcaagtcttctccactatacatcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44066989 ttcaagtcttctccactatacatcatctcactttctttgaatgattcaatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaag 44067088  T
Q  122 aatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44067089 aatcaccagccaaaaaattaccaacagaaaatttaactgcatctgaaggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagc 44067188  T
Q  222 accaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaaga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44067189 accaccaccaacattcatatattcgccataataaagtgtactcaaagcaaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaaga 44067288  T
Q  322 ttacttttcataac 335  Q
    ||||||||||||||    
T  44067289 ttacttttcataac 44067302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 69 - 335
Target Start/End: Original strand, 44092537 - 44092803
Alignment:
Q  69 aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092537 aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa 44092636  T
Q  169 ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaag 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092637 ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaag 44092736  T
Q  269 caaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttcataac 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44092737 caaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttcataac 44092803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 69 - 335
Target Start/End: Complemental strand, 7374 - 7108
Alignment:
Q  69 aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7374 aatcaatattcacaaacctgcatcaaacggcacaccactaccagaaatccaagaatcaccagccaaaaaattaccaacagaaaatttaactgcatcagaa 7275  T
Q  169 ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaag 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7274 ggattagtaataacatgaaaaccaggccatttaactcttccatcagtattagcaccaccaccaacattcatatattcgccataataaagtgtactcaaag 7175  T
Q  269 caaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttcataac 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174 caaaaccacccatccatggagcccaaccttctgaatttatcaaaccatcaagattacttttcataac 7108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University