View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_low_16 (Length: 301)

Name: NF5268_low_16
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_low_16
NF5268_low_16
[»] chr2 (1 HSPs)
chr2 (6-301)||(5195268-5195563)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 5195268 - 5195563
Alignment:
Q  6 aagaatatacaaaaataatgacacttgcttgaatcccaattggtatgttaacaaattatactcaaccagaccaaaatagaatcattaatccaagacaaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195268 aagaatatacaaaaataatgacacttgcttgaatcccaattggtatgttaacaaattatactcaaccagaccaaaatagaatcattaatccaagacaaaa 5195367  T
Q  106 catgaaagaagaaattatcagatataacatcaggtatataactttctattgaaactattacaaatttgaaagctgcagcataatgtaaatttatcccaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5195368 catgaaagaagaaattatcagatataacatcaggtatataactttctattgaaactattacaaatttgaaagctgcagcataatgtaaatttatcccaaa 5195467  T
Q  206 gtcaattgtacagaaaattcttcatatcttcaagcacttaacctatcaatttctacaaacacaacactatatctatcatttaagcaagagcttttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5195468 gtcaattgtacagaaaattcttcatatcttcaagcacttaacctatcaatttctacaaacacaacactatatctatcatttaagtaagagcttttt 5195563  T

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