View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_low_17 (Length: 298)
Name: NF5268_low_17
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 18570055 - 18569767
Alignment:
| Q |
5 |
cagaatgaacctgggattgaatgtgattagtacaagtgaacgaaataacaaattttgattcagtctttaaatagaatagaaaagagaagtgatacctatg |
104 |
Q |
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| T |
18570055 |
cagaatgaacctgggattgaatatgattagtacaagtgaacgaaataacaaattttgattcggtctttaaatagaatagaaaagagaagtgatacctatg |
18569956 |
T |
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| Q |
105 |
cccaaagtgtaaattctggggaatatcgattctcctctgatcttattatttatcatatcacaagtttccctctcattttcaacagttccatctgtaacta |
204 |
Q |
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| T |
18569955 |
cccaaagtgtaaattctggggaatattgattctcctctgatcttcttatttatcatatcacaagtttccctctcatcttcaacagttccatctgtaacta |
18569856 |
T |
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| Q |
205 |
ggaaaataattggaactgatcttcggccatcggatagcatctctaatgcctgaaaataaaacgaaataaaaacatataatacacctatg |
293 |
Q |
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| T |
18569855 |
ggaaaataatcggaactgatcttcggccatcggatagcatctctaatgcctgaaaataaaatgaaataaaaacatataatacacctatg |
18569767 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 51867584 - 51867668
Alignment:
| Q |
174 |
ctctcattttcaacagttccatctgtaactaggaaaataattggaactgatcttcggccatcggatagcatctctaatgcctgaa |
258 |
Q |
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| T |
51867584 |
ctctcatcttcaacagttccatctgtaactaggaaaattatcggaactgaactttgagcaccggatagaatttctattgcctgaa |
51867668 |
T |
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