View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_low_18 (Length: 280)

Name: NF5268_low_18
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_low_18
NF5268_low_18
[»] chr5 (7 HSPs)
chr5 (1-261)||(42740890-42741151)
chr5 (1-261)||(21745035-21745296)
chr5 (1-45)||(3173849-3173893)
chr5 (1-44)||(18740038-18740081)
chr5 (1-44)||(43299937-43299980)
chr5 (1-44)||(32863333-32863377)
chr5 (1-31)||(26063055-26063085)
[»] chr7 (11 HSPs)
chr7 (45-216)||(27601933-27602104)
chr7 (1-50)||(25533957-25534005)
chr7 (1-44)||(21453183-21453227)
chr7 (2-45)||(42004879-42004922)
chr7 (1-44)||(12003333-12003377)
chr7 (1-44)||(31418966-31419010)
chr7 (1-44)||(21358377-21358419)
chr7 (7-44)||(6472697-6472735)
chr7 (7-45)||(18886296-18886334)
chr7 (1-43)||(44660056-44660097)
chr7 (101-142)||(2820756-2820797)
[»] chr3 (5 HSPs)
chr3 (45-236)||(28308447-28308637)
chr3 (1-46)||(2339181-2339227)
chr3 (1-44)||(52893141-52893185)
chr3 (2-43)||(9456119-9456161)
chr3 (1-31)||(40922562-40922592)
[»] chr6 (4 HSPs)
chr6 (1-44)||(14125100-14125143)
chr6 (1-44)||(16497562-16497606)
chr6 (1-31)||(7170730-7170760)
chr6 (74-143)||(10389021-10389090)
[»] chr4 (8 HSPs)
chr4 (1-44)||(8433373-8433416)
chr4 (4-44)||(46164756-46164797)
chr4 (1-44)||(14800360-14800404)
chr4 (1-44)||(23218587-23218628)
chr4 (1-31)||(21421933-21421963)
chr4 (1-31)||(33754316-33754346)
chr4 (1-45)||(44504332-44504377)
chr4 (1-30)||(47825605-47825634)
[»] chr1 (6 HSPs)
chr1 (1-44)||(26354696-26354739)
chr1 (1-42)||(324368-324409)
chr1 (3-43)||(48183914-48183953)
chr1 (1-31)||(18994629-18994659)
chr1 (1-31)||(26014229-26014259)
chr1 (77-113)||(30626332-30626368)
[»] chr8 (8 HSPs)
chr8 (1-45)||(1667822-1667867)
chr8 (1-45)||(32381197-32381241)
chr8 (1-45)||(32435152-32435196)
chr8 (1-45)||(16658527-16658572)
chr8 (1-45)||(33360100-33360145)
chr8 (7-43)||(775081-775117)
chr8 (7-43)||(780735-780771)
chr8 (2-46)||(43915826-43915869)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-44)||(39323-39367)
[»] chr2 (1 HSPs)
chr2 (1-44)||(19319365-19319408)
[»] scaffold1160 (1 HSPs)
scaffold1160 (1-41)||(2168-2209)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 42740890 - 42741151
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccc-cagttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccat 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||    
T  42740890 ggggtggcggtggctcccccttgccaccccccagttccgccactgctccacatctggacatgcaaagttgtgactcatgaaacataatgctgcacgccat 42740989  T
Q  100 taaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagca 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42740990 taaattatcctttgacagcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaaatagca 42741089  T
Q  200 ttaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataaccaccgata 261  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42741090 ttaaagttatgctcctcttgggtaaacatcaactgattacccgagccgaataaccaccgata 42741151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21745035 - 21745296
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccc-cagttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccat 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||  |||||||||    
T  21745035 ggggtggcggtggctcccccttgccaccccccagttccgccactgctccatatccagacatgcaaagttgtgactcatgagatataatgccgcacgccat 21745134  T
Q  100 taaattatcctttgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagca 199  Q
     |||||||||||||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21745135 caaattatcctttgacaacaacctattttgaagaagtctccaaactagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagca 21745234  T
Q  200 ttaaagttatgcacctcttgggtaaacatcaactgattacccgatccgaataaccaccgata 261  Q
    ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||    
T  21745235 ttaaagttatgcacctcctaggtaaacatcaactgattacccgagccgaataaccaccgata 21745296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3173893 - 3173849
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactgc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3173893 ggggtggcggtggctcccccttgccacccccagttccgccactgc 3173849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18740038 - 18740081
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  18740038 ggggtggcggtggctcccccttgccaaccccagttccgccactg 18740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43299980 - 43299937
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  43299980 ggggtggcggtggctcccccttgccaaccccagttccgccactg 43299937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32863377 - 32863333
Alignment:
Q  1 ggggtggcggtggctcccccttgccac-ccccagttccgccactg 44  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  32863377 ggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26063085 - 26063055
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  26063085 ggggtggcggtggctcccccttgccaccccc 26063055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 27602104 - 27601933
Alignment:
Q  45 ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc 144  Q
    ||||||||||||||| |||||| | |||||  ||| | ||||||| || ||||| |||||||||| |||||  ||||||||||||||||| ||| |||||    
T  27602104 ctccacatccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagc 27602005  T
Q  145 tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctc 216  Q
     || |||||||| |||  | |||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27602004 aagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcattagagttatgcacctc 27601933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25534005 - 25533957
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactgctccac 50  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  25534005 ggggtggcggtggctcccccttgcca-ccccagttccgccactgcaccac 25533957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21453183 - 21453227
Alignment:
Q  1 ggggtggcggtggctcccccttgcca-cccccagttccgccactg 44  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  21453183 ggggtggcggtggctcccccttgccaccccccagttccgccactg 21453227  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 42004922 - 42004879
Alignment:
Q  2 gggtggcggtggctcccccttgccacccccagttccgccactgc 45  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  42004922 gggtggcagtggctcccccttaccacccccagttccgccactgc 42004879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12003333 - 12003377
Alignment:
Q  1 ggggtggcggtggctcccccttgcca-cccccagttccgccactg 44  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||    
T  12003333 ggggtggcggtggctcctccttgccaccccccagttccgccactg 12003377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31419010 - 31418966
Alignment:
Q  1 ggggtggcggtggctcccccttgccac-ccccagttccgccactg 44  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  31419010 ggggtggcggtggctcccccttgccaccccccggttccgccactg 31418966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21358377 - 21358419
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  21358377 ggggtggcggtggctcccccttacca-ccccagttccgccactg 21358419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 6472697 - 6472735
Alignment:
Q  7 gcggtggctcccccttgcca-cccccagttccgccactg 44  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  6472697 gcggtggctcccccttgccaccccccagttccgccactg 6472735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 18886334 - 18886296
Alignment:
Q  7 gcggtggctcccccttgccacccccagttccgccactgc 45  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  18886334 gcggtcgctcccccttgccaccctcagttccgccactgc 18886296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44660097 - 44660056
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccact 43  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  44660097 ggggtggcggtggctcccccttgcca-ccccagttccggcact 44660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 2820797 - 2820756
Alignment:
Q  101 aaattatcctttgactgcaacctatttcgaagaagtcttcaa 142  Q
    ||||||||||||||  |||||| |||||||||||||||||||    
T  2820797 aaattatcctttgatggcaaccaatttcgaagaagtcttcaa 2820756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 28308447 - 28308637
Alignment:
Q  45 ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc 144  Q
    ||||||||||||||| ||||||||||||||  | ||| |||||||  |  ||||  ||||||||||||||| |||||||||| |||||||||||||||||    
T  28308447 ctccacatccggacacgcaaagttgtgacttgt-agatataatgtcacgtgccaccaaattatcctttgacagcaacctattccgaagaagtcttcaagc 28308545  T
Q  145 tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctcttgggtaaacatcaactgat 236  Q
     || |||||||| |||  |  ||| || |||||||||||| ||||||||||||||||| |||||| || ||| || ||| ||| ||||||||    
T  28308546 aagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcattagagttatacatctcctgagtagacaacaactgat 28308637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2339181 - 2339227
Alignment:
Q  1 ggggtggcggtggctcccccttgcca-cccccagttccgccactgct 46  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  2339181 ggggtggcggtggctcccccttgccaccccccagttccgccactgct 2339227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 52893185 - 52893141
Alignment:
Q  1 ggggtggcggtggctcccccttgcc-acccccagttccgccactg 44  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  52893185 ggggtggcggtggctcccccttgccaacccccagttccgccactg 52893141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 9456161 - 9456119
Alignment:
Q  2 gggtggcggtggctcccccttgccac-ccccagttccgccact 43  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  9456161 gggtggcggtggctcccccttgccaccccccagttccgccact 9456119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40922592 - 40922562
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  40922592 ggggtggcggtggctcccccttgccaccccc 40922562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14125100 - 14125143
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  14125100 ggggtagcggtggctcccccttgccacccccagttccgccactg 14125143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16497562 - 16497606
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccc-cagttccgccactg 44  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  16497562 ggggtggcggtggctcccccttgccaccccgcagttccgccactg 16497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7170760 - 7170730
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  7170760 ggggtggcggtggctcccccttgccaccccc 7170730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 10389090 - 10389021
Alignment:
Q  74 tcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaag 143  Q
    |||||||| |||||||||| |||||  |||||| |||||||| | | |||||| ||||||||||| ||||    
T  10389090 tcatgagagataatgttgcgcgccaccaaattaccctttgacggtagcctattccgaagaagtctccaag 10389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8433373 - 8433416
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  8433373 ggggtggcggtggctcccccttgccacccccggttccgccactg 8433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 46164756 - 46164797
Alignment:
Q  4 gtggcggtggctcccccttgccacc-cccagttccgccactg 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  46164756 gtggcggtggctcccccttgccaccacccagttccgccactg 46164797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14800360 - 14800404
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc-agttccgccactg 44  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  14800360 ggggtggctgtggctcccccttgccaccccctagttccgccactg 14800404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23218587 - 23218628
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  23218587 ggggtggcggtggctcccc--tgccacccccagttccgccactg 23218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 21421963 - 21421933
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  21421963 ggggtggcggtggctcccccttgccaccccc 21421933  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33754316 - 33754346
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  33754316 ggggtggcggtggctcccccttgccaccccc 33754346  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44504377 - 44504332
Alignment:
Q  1 ggggtggcggtggctcccccttgcc-acccccagttccgccactgc 45  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  44504377 ggggtggcggtggctcccccttgccaacccctagttccgcccctgc 44504332  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 47825634 - 47825605
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccc 30  Q
    ||||||||||||||||||||||||||||||    
T  47825634 ggggtggcggtggctcccccttgccacccc 47825605  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26354739 - 26354696
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  26354739 ggggtggcggtggctcccccttgccacctccagttccgccactg 26354696  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 324409 - 324368
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccac 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  324409 ggggtggcggtggctcccccttgccacccccagatccgccac 324368  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 48183953 - 48183914
Alignment:
Q  3 ggtggcggtggctcccccttgccacccccagttccgccact 43  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  48183953 ggtggcggtggctcccccttgcca-ccccagttccgccact 48183914  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18994629 - 18994659
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  18994629 ggggtggcggtggctcccccttgccaccccc 18994659  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 26014259 - 26014229
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc 31  Q
    |||||||||||||||||||||||||||||||    
T  26014259 ggggtggcggtggctcccccttgccaccccc 26014229  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 30626332 - 30626368
Alignment:
Q  77 tgagacataatgttgcacgccattaaattatcctttg 113  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  30626332 tgagaaataatgttgcacgccattagattatcctttg 30626368  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1667867 - 1667822
Alignment:
Q  1 ggggtggcggtggctcccccttgccac-ccccagttccgccactgc 45  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  1667867 ggggtggcggtggctcccccttgccaccccccagttccgccactgc 1667822  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32381241 - 32381197
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactgc 45  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  32381241 ggggtggcggtggctcccccttgccacccccggctccgccactgc 32381197  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32435196 - 32435152
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactgc 45  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  32435196 ggggtggcggtggctcccccttgccacccccggctccgccactgc 32435152  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16658572 - 16658527
Alignment:
Q  1 ggggtggcggtggctcccccttgccac-ccccagttccgccactgc 45  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||    
T  16658572 ggggtggcggtgtctcccccttgccaccccccagttccgccactgc 16658527  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33360145 - 33360100
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc-agttccgccactgc 45  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    
T  33360145 ggggtggcggtggctcccccttgccaccccctaattccgccactgc 33360100  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 775081 - 775117
Alignment:
Q  7 gcggtggctcccccttgccacccccagttccgccact 43  Q
    |||||||||| |||||||||||| |||||||||||||    
T  775081 gcggtggctcgcccttgccacccgcagttccgccact 775117  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 780735 - 780771
Alignment:
Q  7 gcggtggctcccccttgccacccccagttccgccact 43  Q
    |||||||||| |||||||||||| |||||||||||||    
T  780735 gcggtggctcgcccttgccacccgcagttccgccact 780771  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 43915869 - 43915826
Alignment:
Q  2 gggtggcggtggctcccccttgccacccccagttccgccactgct 46  Q
    |||||||||||||||| |||||||| ||||||||| |||||||||    
T  43915869 gggtggcggtggctcctccttgcca-ccccagttcagccactgct 43915826  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39367 - 39323
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc-agttccgccactg 44  Q
    |||||||| |||||||||||||||||||||| |||||||||||||    
T  39367 ggggtggctgtggctcccccttgccaccccctagttccgccactg 39323  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19319365 - 19319408
Alignment:
Q  1 ggggtggcggtggctcccccttgccacccccagttccgccactg 44  Q
    |||||||||||||||| ||||||||| || ||||||||||||||    
T  19319365 ggggtggcggtggctctcccttgccaacctcagttccgccactg 19319408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2209 - 2168
Alignment:
Q  1 ggggtggcggtggctcccccttgccaccccc-agttccgcca 41  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  2209 ggggtggcggtggctcccccttaccaccccctagttccgcca 2168  T

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