View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5268_low_30 (Length: 235)

Name: NF5268_low_30
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5268_low_30
NF5268_low_30
[»] scaffold0459 (1 HSPs)
scaffold0459 (13-218)||(3392-3597)
[»] scaffold0366 (1 HSPs)
scaffold0366 (13-218)||(3392-3597)
[»] chr2 (1 HSPs)
chr2 (13-218)||(44371255-44371460)


Alignment Details
Target: scaffold0459 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 3392 - 3597
Alignment:
Q  13 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctaagctgaaggaacaaaaagactcacattta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3392 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta 3491  T
Q  113 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3492 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 3591  T
Q  213 tctcag 218  Q
    ||||||    
T  3592 tctcag 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 3392 - 3597
Alignment:
Q  13 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctaagctgaaggaacaaaaagactcacattta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3392 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctgagctgaaggaacaaaaagactcacattta 3491  T
Q  113 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3492 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 3591  T
Q  213 tctcag 218  Q
    ||||||    
T  3592 tctcag 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 44371460 - 44371255
Alignment:
Q  13 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtctaagctgaaggaacaaaaagactcacattta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44371460 ataatacttgtaggaacattccttctgtttttcaaaatgataagttatgccttatacttataccttgtcttagctgaaggaacaaaaagactcacattta 44371361  T
Q  113 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44371360 tttctttgtctaatcaacaaccgcaatttctgaaatatgaatcagaggaacaatatggttccatgacagaatccactatgactggaggagacttttctgc 44371261  T
Q  213 tctcag 218  Q
    ||||||    
T  44371260 tctcag 44371255  T

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