View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_low_35 (Length: 218)
Name: NF5268_low_35
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 34796542 - 34796739
Alignment:
| Q |
13 |
agcataggtagtgttggtgctgcttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttg |
112 |
Q |
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| T |
34796542 |
agcataggtagtgttggtgctggttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttg |
34796641 |
T |
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| Q |
113 |
tttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgatgatgtc |
210 |
Q |
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| T |
34796642 |
tttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttgatgtc |
34796739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 22234596 - 22234680
Alignment:
| Q |
56 |
tatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaaca |
140 |
Q |
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| T |
22234596 |
tatggcatgcttgtgctggtcctcttacctcacttcctaagaaaggaaatgttgtggtgtattttccacaaggtcacttggaaca |
22234680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 4274533 - 4274417
Alignment:
| Q |
39 |
ttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaa |
138 |
Q |
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| T |
4274533 |
ttctgtttgtttggagctatggcatgcttgtgctggtcctttgatctctttaccaaagaaaggaagcattgttgtttatgttccacaaggacactttgaa |
4274434 |
T |
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| Q |
139 |
catcttcatgattttcc |
155 |
Q |
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| T |
4274433 |
caagctcatgattttcc |
4274417 |
T |
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