View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_low_8 (Length: 399)
Name: NF5268_low_8
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 2734675 - 2735056
Alignment:
| Q |
1 |
tgttgcaagcataaagtagcgatacaaataatttctcagtggatgtatatctagtctaagcatcattcaagattcggctaagtccattccatcatcgata |
100 |
Q |
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| T |
2734675 |
tgttgcaagcatagagtagcgatacaaataatttctcagtggatgtatatctagtctaagcatcattcaagattcgactaagtccattccatcatcgata |
2734774 |
T |
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| Q |
101 |
tcttgtgctagcaagaacccgattgactcatcttttgcgacaatgtacatttttaccggtttacctggtactagcggcacgagtactggtggattcacaa |
200 |
Q |
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| T |
2734775 |
tcttgtgctagcaagaacccgattgactcatcttttgcgacaatgtacaactttaccggtttacctggtactagtggcacgagtactggtggattcacaa |
2734874 |
T |
|
| Q |
201 |
aggcatacttgatttgcttaaaggtgttatgttttcggctccccatatcattccctctaagtcctttagtcttagcaatggtgaaaatgacttcatcttg |
300 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
2734875 |
aggcctacttgatttgcttaatggtgttatgttttcggctccccatatcattccctctaagtcctttagtcttaacaaaggtgaaaatgacttcatcttg |
2734974 |
T |
|
| Q |
301 |
ccaatcaaattagatatgaaccttcttaggaaacttattttccccgtagagactctgcaacttcttctttgtgccttgttct |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2734975 |
ccaatcaaattagatatgaaccttcttaggaaacttattttccccgtagagactctgcaacttcttctttgtgccttgttct |
2735056 |
T |
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