View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5268_low_9 (Length: 361)
Name: NF5268_low_9
Description: NF5268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5268_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 39693879 - 39693579
Alignment:
| Q |
18 |
gcattagggtctgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacaaaaagaaaatcat |
117 |
Q |
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| T |
39693879 |
gcattagggtttgacatcaaaaagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacagaaagaaaatcat |
39693780 |
T |
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| Q |
118 |
cacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgattttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693779 |
cacaacaatggactccaacaccaaaagcaatttctccactcattaatcttctatgaactttatcaaccatgcatttagagagaattaaccatgattttca |
39693680 |
T |
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| Q |
218 |
agtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtacacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693679 |
agtgttcatgtatgtggtgtcattgtaaacttcttgtaaagttgatcaatcacaaatcaacatcagttgtaagcttgacataaccaaaccaaagtacacc |
39693580 |
T |
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| Q |
318 |
t |
318 |
Q |
| |
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| T |
39693579 |
t |
39693579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 39693570 - 39693523
Alignment:
| Q |
305 |
accaaagtacacctagtgctttgttctaggcttttttattagtataat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39693570 |
accaaagtacacctagtgctttgttctaggcttttttattagtataat |
39693523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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