View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5269-Insertion-1 (Length: 570)

Name: NF5269-Insertion-1
Description: NF5269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5269-Insertion-1
NF5269-Insertion-1
[»] chr1 (8 HSPs)
chr1 (42-495)||(44307942-44308395)
chr1 (71-495)||(44194024-44194442)
chr1 (41-495)||(44314982-44315442)
chr1 (304-495)||(44300693-44300876)
chr1 (524-570)||(44308418-44308464)
chr1 (524-570)||(44315459-44315505)
chr1 (530-570)||(44194465-44194505)
chr1 (530-570)||(44300899-44300939)
[»] chr3 (8 HSPs)
chr3 (191-491)||(23715149-23715447)
chr3 (191-491)||(23733605-23733903)
chr3 (191-491)||(23696689-23696992)
chr3 (231-491)||(23752060-23752321)
chr3 (524-570)||(23696622-23696668)
chr3 (524-570)||(23715079-23715125)
chr3 (524-570)||(23733535-23733581)
chr3 (524-570)||(23751990-23752036)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 42 - 495
Target Start/End: Original strand, 44307942 - 44308395
Alignment:
Q  42 ggggtttcattgtgatcttttctcactttataaaattgggggaaacagtagaggcaacttccaataccttattgtcgtggtctttctcggcgagggacct 141  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44307942 ggggtttcatcgtgatcttttctcactttataaaatcgggggaaacagtagaggcaacttccaataccttatcgtcgtggtctttctcggcgagggacct 44308041  T
Q  142 ttttctaaaaccttgattaggaccatatgatgcttaagagccaaacagaaaaatgacacaagaattcaatttgcgagtgagcatcattcaagggaaatct 241  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44308042 ttttctcaaaccttgatcaggaccatatgatgcttaagagccaaacaggaaaatgacacaagaattcaatttgcgagtgagcatcattgaagggaaatct 44308141  T
Q  242 agattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacaccc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44308142 agattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacaccc 44308241  T
Q  342 caacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttccttgg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||    
T  44308242 caacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttaaaaaaaaaaaatatgaattcttcaacaatttgttccctgttccttgg 44308341  T
Q  442 tttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44308342 tttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt 44308395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 71 - 495
Target Start/End: Original strand, 44194024 - 44194442
Alignment:
Q  71 ataaaattgggggaaacagtagaggcaacttccaataccttattgtcgtggtctttctcggcgagggacctttttctaaaa--ccttgattaggaccata 168  Q
    ||||||| ||||||||| |||  ||||||| ||||||||||  ||||| | || |||||| |||||||||||||| |||||  |||| || |||||||||    
T  44194024 ataaaatcgggggaaacggtaacggcaactaccaataccttgctgtcgcgctcattctcgtcgagggacctttttttaaaaaacctttatcaggaccata 44194123  T
Q  169 tgatgcttaagagccaaacagaaaaatgacacaagaattcaatttgcgagtgagcatcattcaagggaaatctagattattggatcgccgtttcccaagc 268  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| | || || |  |||| ||| |||||||||||||||||||| || ||||| ||||    
T  44194124 tgatgcttaagagccaaacaggaaaatgacacaagagttcaattttctagcgaaccccattgaagagaaatctagattattggatcaccatttccaaagc 44194223  T
Q  269 atcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttt 368  Q
    |||||||| ||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |     
T  44194224 atcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaattttcgttactataaaacactccaacacctatgaaaccaaacacac-tc 44194322  T
Q  369 tcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatt 468  Q
     | ||||||||||||||||||||||              ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44194323 ccgtcaaaccaaggaaccctaattt-------aaaaaaatgaattcttcaacaatttgttccatgttccttggtttgatcctaatttctcaatcaccatt 44194415  T
Q  469 tgcagcaaatgcaagagttcttggttt 495  Q
    |||| ||||||||||| ||||||||||    
T  44194416 tgcatcaaatgcaagacttcttggttt 44194442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 41 - 495
Target Start/End: Original strand, 44314982 - 44315442
Alignment:
Q  41 aggggtttcattgtgatcttttctcactttataaaattgggggaaacagtagaggcaacttccaataccttattgtcgtggtctttctcggcgagggacc 140  Q
    ||||||||||| ||||| |||| ||||| ||| |||| | | ||||| |||  ||||||||||||| |||| || ||  |||||||||||| ||||||||    
T  44314982 aggggtttcatcgtgatattttttcactctatgaaatcgcgtgaaacggtaacggcaacttccaatgccttgttctctcggtctttctcggtgagggacc 44315081  T
Q  141 tttttctaaaaccttgattaggaccatatgatgcttaagagccaaacagaaaaatgacacaagaat----------tcaatttgcgagtgagcatcattc 230  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||| |          |||||||  ||||||||  ||||     
T  44315082 tttttctaaaaccttaattatgaccatatgaagcttaagagccaaacaggaaaatgacacaagagtagtcaagaggtcaatttatgagtgagcgccattg 44315181  T
Q  231 aagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaattt--ccgtta 328  Q
    |  | ||    |||||||||||||||||| |||||| |||||| || |||||||||| ||||||||| |||||||||| |||||||||||||  ||||||    
T  44315182 attg-aagggaagattattggatcgccgtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttttccgtta 44315280  T
Q  329 ctataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnnnnnntgaattcttcaacaatttgtt 428  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||               |||||||||||||||||||||    
T  44315281 ctataaaatacctcaacacctatgaaaccaaacacactcttcctcaaaccaaggaatcctaatt-----aaaaagaaaatgaattcttcaacaatttgtt 44315375  T
Q  429 ccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  44315376 ccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaacacttcttggttt 44315442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 304 - 495
Target Start/End: Original strand, 44300693 - 44300876
Alignment:
Q  304 ttaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatttnnnnnnnnnn 403  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | ||||||||||||||||||||||              
T  44300693 ttaccctaaattagaatttccgttactataaaacactccaacacctatgaaaccaaacacactcc-cgtcaaaccaaggaaccctaatttaaaaaaa--- 44300788  T
Q  404 nnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttggttt 495  Q
        ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  44300789 ----tgaattcttcaacaatttgttccatgttccttggtttgatcctaatttctcaatcaccatttgcatcaaatgcaagacttcttggttt 44300876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 44308418 - 44308464
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44308418 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 44308464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 570
Target Start/End: Original strand, 44315459 - 44315505
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||    
T  44315459 ccactagtttccttaatttgcgctgcttcatccaacaaggtagaatg 44315505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 44194465 - 44194505
Alignment:
Q  530 gtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  44194465 gtttccttaatttgcgctgcttcatccaacaaggtagaatg 44194505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 44300899 - 44300939
Alignment:
Q  530 gtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  44300899 gtttccttaatttgcgctgcttcatccaacaaggtagaatg 44300939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 9e-87; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 191 - 491
Target Start/End: Complemental strand, 23715447 - 23715149
Alignment:
Q  191 aaaatgacacaagaattcaatttgcgagtgagcatcattcaagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgct 290  Q
    |||||||||||||  |||||||| | || || |  |||| |||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||    
T  23715447 aaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgct 23715348  T
Q  291 aaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaa 390  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23715347 aaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaa 23715248  T
Q  391 tttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttctt 490  Q
    ||               ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  23715247 tt--aaaaaaaaataaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttctt 23715150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 191 - 491
Target Start/End: Complemental strand, 23733903 - 23733605
Alignment:
Q  191 aaaatgacacaagaattcaatttgcgagtgagcatcattcaagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgct 290  Q
    |||||||||||||  |||||||| | || || |  |||| |||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||    
T  23733903 aaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgct 23733804  T
Q  291 aaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaa 390  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23733803 aaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaa 23733704  T
Q  391 tttnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttctt 490  Q
    ||               ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  23733703 tt--aaaaaaaaataaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttctt 23733606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 191 - 491
Target Start/End: Complemental strand, 23696992 - 23696689
Alignment:
Q  191 aaaatgacacaagaattcaatttgcgagtgagcatcattcaagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgct 290  Q
    |||||||||||||  |||||||| | || || |  |||| |||||||||||||||||||||||| || ||||||||||||||| || |||||||||||||    
T  23696992 aaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgct 23696893  T
Q  291 aaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaa 390  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  23696892 aaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctgtgaaaccaaacacactcttcctcaaaccaaggaaccctaa 23696793  T
Q  391 tt---tnnnnnnnnnnnnnntgaattcttcaacaatttgttccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagtt 487  Q
    ||                  ||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||    
T  23696792 ttaaaaaaaaaaaaaaaaaatgaattctttaacaatttgttccatgttccttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacactt 23696693  T
Q  488 cttg 491  Q
    ||||    
T  23696692 cttg 23696689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 231 - 491
Target Start/End: Complemental strand, 23752321 - 23752060
Alignment:
Q  231 aagggaaatctagattattggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttact 330  Q
    |||||||| ||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  23752321 aagggaaa-ctagattattggatcaccatttcccaagcatcacaatcgctgtgatttgctaaaaatatgttaattaccctaaattagaatttcctttact 23752223  T
Q  331 ataaaacaccccaacacctatgaaaccaaacacacttttcctcaaaccaaggaaccctaatt--tnnnnnnnnnnnnnntgaattcttcaacaatttgtt 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||                 ||||||||| |||||||||||    
T  23752222 ataaaacaccccaacacctatgaaaccaaacacactcttcctcaaaccaaggaaccctaattaaaaaaataaaaaaaaatgaattctttaacaatttgtt 23752123  T
Q  429 ccctgttccttggtttgatcctaatttctcaatcaccatttgcagcaaatgcaagagttcttg 491  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  23752122 ccatgttccttggtttgattctaatttctcaatcaccatttgcagcaaatgcaacacttcttg 23752060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 23696668 - 23696622
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||    
T  23696668 ccactagtttccttactttgcgacggttcatccaacaaggtagaatg 23696622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 23715125 - 23715079
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||    
T  23715125 ccactagtttccttactttgcgacggttcatccaacaaggtagaatg 23715079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 23733581 - 23733535
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||    
T  23733581 ccactagtttccttactttgcgacggttcatccaacaaggtagaatg 23733535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 524 - 570
Target Start/End: Complemental strand, 23752036 - 23751990
Alignment:
Q  524 ccactggtttccttactttgcgctgcttcatccaacaaggtagaatg 570  Q
    ||||| ||||||||||||||||  | |||||||||||||||||||||    
T  23752036 ccactagtttccttactttgcgacggttcatccaacaaggtagaatg 23751990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University