View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5269-Insertion-2 (Length: 333)

Name: NF5269-Insertion-2
Description: NF5269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5269-Insertion-2
NF5269-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-296)||(28699027-28699315)


Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 28699315 - 28699027
Alignment:
Q  8 tttcttactctacacgtaattgtctaattttagttactgcattatttatttgttttgatccccttcatcttcactttcttcaaacaaccaccnnnnnnnn 107  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||            
T  28699315 tttcttactctacacataattgtctaattttagttactgcattatttatttgttttgatctccttcatctttactttcttcaaacagccaccttttttct 28699216  T
Q  108 cttggtacatttgcttccatttcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag 207  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28699215 cttggtccatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag 28699116  T
Q  208 ccttatcggaaatcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaattcggctaattaatatggaact 296  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28699115 ccttatcggaaagcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaactcggctaattaatatggaact 28699027  T

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