View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5269_high_2 (Length: 250)

Name: NF5269_high_2
Description: NF5269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5269_high_2
NF5269_high_2
[»] chr8 (19 HSPs)
chr8 (16-232)||(11876473-11876690)
chr8 (16-232)||(11891480-11891697)
chr8 (11-83)||(29038029-29038101)
chr8 (11-82)||(415136-415207)
chr8 (11-82)||(1657867-1657938)
chr8 (11-82)||(14031794-14031865)
chr8 (11-86)||(15920017-15920092)
chr8 (11-82)||(36801834-36801905)
chr8 (11-82)||(37402238-37402309)
chr8 (11-72)||(23995099-23995160)
chr8 (16-71)||(3539270-3539325)
chr8 (20-71)||(22808808-22808859)
chr8 (18-72)||(6235021-6235075)
chr8 (11-85)||(12701471-12701544)
chr8 (11-57)||(29005524-29005570)
chr8 (22-71)||(38747081-38747129)
chr8 (11-71)||(7975965-7976025)
chr8 (16-85)||(32161890-32161961)
chr8 (25-73)||(43922197-43922245)
[»] chr3 (19 HSPs)
chr3 (11-74)||(53056317-53056380)
chr3 (27-86)||(7137470-7137529)
chr3 (11-85)||(37681303-37681377)
chr3 (11-84)||(2699537-2699610)
chr3 (21-86)||(21587029-21587093)
chr3 (11-82)||(3806625-3806696)
chr3 (11-82)||(44177048-44177119)
chr3 (16-71)||(49758127-49758182)
chr3 (35-85)||(9768838-9768888)
chr3 (11-85)||(31293032-31293106)
chr3 (11-73)||(39948854-39948916)
chr3 (16-72)||(13867861-13867917)
chr3 (25-73)||(54767968-54768016)
chr3 (24-71)||(29541804-29541851)
chr3 (25-62)||(7639436-7639473)
chr3 (50-86)||(4857212-4857248)
chr3 (50-86)||(4878947-4878983)
chr3 (25-73)||(5907358-5907406)
chr3 (25-73)||(21092025-21092073)
[»] chr2 (20 HSPs)
chr2 (11-83)||(44959579-44959651)
chr2 (10-74)||(20110952-20111016)
chr2 (16-71)||(1743417-1743472)
chr2 (11-83)||(14690142-14690214)
chr2 (19-85)||(9045255-9045321)
chr2 (11-85)||(21384694-21384768)
chr2 (11-85)||(41207424-41207498)
chr2 (16-64)||(11259333-11259381)
chr2 (45-85)||(45554309-45554349)
chr2 (11-82)||(2383048-2383119)
chr2 (16-74)||(10886515-10886573)
chr2 (23-85)||(20625286-20625348)
chr2 (36-74)||(33615236-33615274)
chr2 (11-60)||(744946-744995)
chr2 (16-85)||(16568218-16568287)
chr2 (11-64)||(23914752-23914805)
chr2 (49-85)||(18470156-18470192)
chr2 (11-71)||(31525227-31525287)
chr2 (11-71)||(37110105-37110165)
chr2 (16-60)||(45624746-45624790)
[»] scaffold1017 (1 HSPs)
scaffold1017 (16-83)||(2087-2154)
[»] chr6 (9 HSPs)
chr6 (16-73)||(2536598-2536655)
chr6 (16-86)||(5493028-5493098)
chr6 (11-71)||(11573637-11573697)
chr6 (16-84)||(15960356-15960424)
chr6 (16-71)||(25342083-25342138)
chr6 (18-85)||(8174621-8174690)
chr6 (11-48)||(11573370-11573407)
chr6 (11-84)||(20469612-20469685)
chr6 (11-71)||(7914616-7914676)
[»] chr1 (23 HSPs)
chr1 (11-83)||(38340063-38340135)
chr1 (16-86)||(26768212-26768282)
chr1 (16-86)||(42986566-42986636)
chr1 (11-64)||(42560995-42561048)
chr1 (11-74)||(4968738-4968801)
chr1 (11-85)||(42561685-42561759)
chr1 (11-64)||(40368045-40368098)
chr1 (11-84)||(43020509-43020581)
chr1 (25-73)||(4242049-4242097)
chr1 (11-71)||(8028719-8028779)
chr1 (25-73)||(8573996-8574044)
chr1 (19-71)||(43603002-43603054)
chr1 (11-70)||(3086123-3086181)
chr1 (17-72)||(3156267-3156322)
chr1 (16-55)||(33578793-33578832)
chr1 (11-69)||(14487120-14487178)
chr1 (29-74)||(16296167-16296212)
chr1 (25-73)||(5812144-5812192)
chr1 (19-71)||(8454457-8454509)
chr1 (18-74)||(33129381-33129436)
chr1 (25-73)||(34969385-34969433)
chr1 (16-72)||(35056239-35056295)
chr1 (25-73)||(46273540-46273588)
[»] scaffold0013 (1 HSPs)
scaffold0013 (11-74)||(96981-97044)
[»] chr4 (16 HSPs)
chr4 (16-85)||(38004332-38004402)
chr4 (16-72)||(10981668-10981724)
chr4 (11-82)||(23315864-23315935)
chr4 (16-58)||(28915574-28915616)
chr4 (11-71)||(4815856-4815916)
chr4 (16-84)||(7712908-7712976)
chr4 (25-73)||(32547389-32547437)
chr4 (16-84)||(43097072-43097140)
chr4 (35-74)||(7396784-7396823)
chr4 (11-70)||(12294291-12294350)
chr4 (16-61)||(24670067-24670112)
chr4 (25-73)||(2133519-2133567)
chr4 (16-64)||(7456681-7456729)
chr4 (25-73)||(23431685-23431733)
chr4 (25-73)||(23432210-23432258)
chr4 (11-43)||(48171787-48171819)
[»] chr7 (22 HSPs)
chr7 (16-85)||(19346315-19346384)
chr7 (11-83)||(29357184-29357257)
chr7 (16-72)||(12650708-12650764)
chr7 (11-82)||(5096548-5096619)
chr7 (11-86)||(13640881-13640956)
chr7 (11-82)||(39753628-39753699)
chr7 (16-86)||(13703262-13703332)
chr7 (21-71)||(25089110-25089160)
chr7 (11-63)||(9059349-9059401)
chr7 (11-86)||(3584096-3584171)
chr7 (16-55)||(5318755-5318794)
chr7 (16-71)||(35070984-35071039)
chr7 (16-71)||(35097017-35097072)
chr7 (17-84)||(39617343-39617410)
chr7 (11-84)||(10040857-10040930)
chr7 (24-69)||(20097945-20097990)
chr7 (16-72)||(33429105-33429162)
chr7 (16-64)||(5468058-5468106)
chr7 (25-73)||(25610629-25610677)
chr7 (16-64)||(35791921-35791969)
chr7 (16-68)||(38636382-38636434)
chr7 (25-73)||(45000987-45001035)
[»] chr5 (27 HSPs)
chr5 (16-85)||(9050969-9051038)
chr5 (16-85)||(28479496-28479565)
chr5 (16-72)||(1592071-1592127)
chr5 (31-86)||(1584658-1584713)
chr5 (16-71)||(9666130-9666185)
chr5 (16-71)||(17704276-17704331)
chr5 (11-86)||(27175124-27175199)
chr5 (11-82)||(27263866-27263937)
chr5 (11-82)||(28394694-28394765)
chr5 (11-82)||(31172326-31172397)
chr5 (11-82)||(41879833-41879904)
chr5 (17-74)||(31202001-31202058)
chr5 (11-64)||(38629279-38629332)
chr5 (24-64)||(21344877-21344917)
chr5 (24-71)||(6205869-6205916)
chr5 (11-70)||(11487560-11487618)
chr5 (17-87)||(14930651-14930721)
chr5 (24-73)||(7464142-7464191)
chr5 (11-64)||(38600655-38600708)
chr5 (25-62)||(40493855-40493892)
chr5 (25-69)||(9523869-9523913)
chr5 (11-71)||(26647208-26647268)
chr5 (16-64)||(26917758-26917806)
chr5 (11-71)||(26918792-26918852)
chr5 (25-73)||(39850816-39850864)
chr5 (25-73)||(42027689-42027737)
chr5 (25-73)||(42516171-42516219)
[»] scaffold0035 (1 HSPs)
scaffold0035 (11-82)||(81784-81855)
[»] scaffold0009 (1 HSPs)
scaffold0009 (16-74)||(53667-53725)
[»] scaffold0018 (1 HSPs)
scaffold0018 (37-86)||(36749-36798)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 11876473 - 11876690
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatccagatttagtgtagtagttaatatttattt 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  11876473 aatataacattattatagaaaaatttatgtaagagtataattgaaataacaaaaaagtttgcccaaaatccagatttagtgtagtagttattatttattt 11876572  T
Q  116 cctcaata-taatttatatgattttggattggtaatgccacatgtataaactgcaactgttcaagcgcaatattgatgattccttttcacaatctatgaa 214  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11876573 cctcaataataatttatatgattttggattagtaatgccacatgtataaactgcaactgttcaagcgcaatattgatgattccttttcgcaatctatgaa 11876672  T
Q  215 ttttataagcattggtat 232  Q
    ||||||||||||||||||    
T  11876673 ttttataagcattggtat 11876690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 11891480 - 11891697
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatccagatttagtgtagtagttaatatttattt 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  11891480 aatataacattattatagaaaaatttatgtaagagtataattgaaataacaaaaaagtttgcccaaaatccagatttagtgtagtagttattatttattt 11891579  T
Q  116 cctcaata-taatttatatgattttggattggtaatgccacatgtataaactgcaactgttcaagcgcaatattgatgattccttttcacaatctatgaa 214  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11891580 cctcaataataatttatatgattttggattagtaatgccacatgtataaactgcaactgttcaagcgcaatattgatgattccttttcgcaatctatgaa 11891679  T
Q  215 ttttataagcattggtat 232  Q
    ||||||||||||||||||    
T  11891680 ttttataagcattggtat 11891697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 29038029 - 29038101
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||| |||||||||||||||||| ||||| ||| |||  ||||||||| |||||||||||||||  |||||||    
T  29038029 ccaacaatataacattattataggaaaatatgtttaaccgtataattggaataacaaaaaagtcatcccaaaa 29038101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 415207 - 415136
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  415207 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 415136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 1657938 - 1657867
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  1657938 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 1657867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 14031794 - 14031865
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  14031794 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 14031865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 15920092 - 15920017
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||| |||||||||||||||||  ||||||||| |||| ||||||||  |||||||||||| || |||||| ||||    
T  15920092 ccaacaatataacattattataagaaaatttgtttaagggtataattagaataacaaaaaattcagcccaagatcc 15920017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 36801905 - 36801834
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  36801905 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 36801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 37402238 - 37402309
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  37402238 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 37402309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 23995099 - 23995160
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    |||| |||||||||||||||||||||||    | ||| ||||||||||||||||||||||||    
T  23995099 ccaacaatataacattattatagaaaaaaccatttaaaagtataattgaaataacaaaaaag 23995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3539325 - 3539270
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||| ||||||||  ||||||||| |||| ||||||||||||||| ||||||    
T  3539325 aatataacgttattatatgaaaatttgtttaagggtataattgaaataaaaaaaaa 3539270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 22808808 - 22808859
Alignment:
Q  20 taacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||| ||||||||||||||| |||| ||||||||||||| | ||||||    
T  22808808 taacattaatatagaaaaatttgtttaagggtataattgaaattataaaaaa 22808859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 6235075 - 6235021
Alignment:
Q  18 tataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||| |||||||||  ||||||||| |||| ||||| |||||||||||||||||    
T  6235075 tataatattattatatgaaaatttgtttaagggtatatttgaaataacaaaaaag 6235021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 12701544 - 12701471
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| ||||||||||||| ||| ||||| || | || | ||||||||||||||||||||||||| || |||||||    
T  12701544 ccaaaaatataacattatcataaaaaaaattatttagg-gtataattgaaataacaaaaaagtcagcacaaaatc 12701471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 29005570 - 29005524
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataatt 57  Q
    |||| ||||||||| |||||||||||||||||| ||| |||||||||    
T  29005570 ccaacaatataacaatattatagaaaaatttgtttaacagtataatt 29005524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 38747081 - 38747129
Alignment:
Q  22 acattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||||| ||||||| || |||| ||||||||||||||||||||||    
T  38747081 acattattatataaaaatt-gtttaagtgtataattgaaataacaaaaaa 38747129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 7975965 - 7976025
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||| |||||||||||  ||||||||| |||  |||||||||||||| |||||||    
T  7975965 ccaacaatatgacattattataagaaaatttgtttaaaggtataattgaaatagcaaaaaa 7976025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 32161961 - 32161890
Alignment:
Q  16 aatataacattattatagaaaaat--ttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    ||||||||||||||| |||||||   |||| |||| ||||||||  |||||||||||||||  |||||||||    
T  32161961 aatataacattattacagaaaaaaaattgtttaagggtataattagaataacaaaaaagtcaacccaaaatc 32161890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 43922245 - 43922197
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||| ||||  |||||||    
T  43922245 ttattatagaaaaagttgtttaagagtataattgagataatgaaaaagt 43922197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 53056380 - 53056317
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  53056380 ccaacaatataacattattatagaaaaatatgtttaagggtataattgaaataacaaaaaagtc 53056317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 7137470 - 7137529
Alignment:
Q  27 attatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||||||||||||| ||||  |||||||| ||||||||||||||| |||||||||||    
T  7137470 attatagaaaaatttgtttaaggatataattggaataacaaaaaagtcagcccaaaatcc 7137529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 37681377 - 37681303
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| |||||||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || ||||||||||    
T  37681377 ccaacaatataacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaaatc 37681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 2699537 - 2699610
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||| ||||||||||||||||| |||||||| | |||| |||||||||||||||  |||||||| ||| |||||    
T  2699537 ccaacaatataacattattatataaaaatttatataagggtataattgaaataatgaaaaagtcagccaaaaat 2699610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 21587029 - 21587093
Alignment:
Q  21 aacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||||||||||| |||| ||||| ||||| |||||||| ||||||||||||||| |||||||||||    
T  21587029 aacattattataaaaaagtttgtttaaga-tataattggaataacaaaaaagtcagcccaaaatcc 21587093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 3806696 - 3806625
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  3806696 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 3806625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 44177048 - 44177119
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  44177048 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 44177119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 49758127 - 49758182
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||| ||||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  49758127 aatataatattattatagaaaaaattgtttaagggtataattgaaataataaaaaa 49758182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 9768888 - 9768838
Alignment:
Q  35 aaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||||||||||||| |||||||||||||||| ||||| |||| ||||||||    
T  9768888 aaaatttgtgtaagtgtataattgaaataactaaaaaatctggccaaaatc 9768838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 31293106 - 31293032
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| ||||||| |||||||||||||||||||  ||| ||||||||| |||||| |||||| || | ||||||||    
T  31293106 ccaacaatataatattattatagaaaaatttgcttaaaagtataattaaaataataaaaaaatcagtccaaaatc 31293032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 39948916 - 39948854
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||| |||||||||||||||||||||||| ||| |||| ||||||||  |||| |||||||||    
T  39948916 ccaacaatataacattattatagaaaaatatgtttaagtgtataattagaatatcaaaaaagt 39948854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 13867861 - 13867917
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||||| |||||||||  ||||||||| ||||| ||||| ||||||||||||||||    
T  13867861 aatataagattattatatgaaaatttgtttaagaatataactgaaataacaaaaaag 13867917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 54768016 - 54767968
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    ||||||| |||||| |||| ||||||||||||||||||||| |||||||    
T  54768016 ttattattgaaaaagttgtttaagagtataattgaaataacgaaaaagt 54767968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 29541804 - 29541851
Alignment:
Q  24 attattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||| | ||||||||| |||| ||||||||||||||||||||||    
T  29541804 attattattggaaaatttgtttaagggtataattgaaataacaaaaaa 29541851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 7639473 - 7639436
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaat 62  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  7639473 ttattatagaaaaagttgtttaagagtataattgaaat 7639436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 4857248 - 4857212
Alignment:
Q  50 gtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  4857248 gtataattggaataacaaaaaagtcagcccaaaatcc 4857212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 4878983 - 4878947
Alignment:
Q  50 gtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  4878983 gtataattggaataacaaaaaagtcagcccaaaatcc 4878947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 5907358 - 5907406
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||| ||||| |||| |||| ||||||||||||||| ||||||||    
T  5907358 ttattatataaaaagttgtttaagggtataattgaaataataaaaaagt 5907406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 21092025 - 21092073
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||  |||| ||||||||    
T  21092025 ttattatagaaaaacttgtttaagagtataattgggataataaaaaagt 21092073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 44959651 - 44959579
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||| ||| |||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||| ||||||||    
T  44959651 ccaacaatgtaacattattatagtaaaatatgtttaagggtataattgaaataacaaaaaagtcagcccaaaa 44959579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 20111016 - 20110952
Alignment:
Q  10 tccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    ||||| ||||||| ||||||||| |||||||| | |||| |||||||||||||||||||||||||    
T  20111016 tccaacaatataatattattatataaaaatttatttaagggtataattgaaataacaaaaaagtc 20110952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 1743472 - 1743417
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  1743472 aatataaaattattatagaaaaatttgtttaagactataattgaaataaaaaaaaa 1743417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 14690142 - 14690214
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||| |||||||||||||||||| ||||| ||| |||| ||||||||| ||||||| ||||||| ||| ||||    
T  14690142 ccaacaatataacattattataggaaaatatgtttaagggtataattggaataacagaaaagtcagcctaaaa 14690214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 9045255 - 9045321
Alignment:
Q  19 ataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| ||||||||| |||||||||| |||||| | || || ||||||||||||||| ||||||||||    
T  9045255 ataatattattatataaaaatttgtttaagagaaaaaatggaataacaaaaaagtcagcccaaaatc 9045321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 21384694 - 21384768
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| |||||| ||||||||||  |||| |||| |||| ||||||||||||||||||||||| |  |||||||||    
T  21384694 ccaacaatatagcattattatatgaaaaattgtttaagggtataattgaaataacaaaaaagccaacccaaaatc 21384768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 41207498 - 41207424
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| |||||||||||||||| | ||||||||| |||   | ||||||||||||||||||||||  |||||||||    
T  41207498 ccaataatataacattattattggaaaatttgtttaaagatttaattgaaataacaaaaaagtcatcccaaaatc 41207424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 11259381 - 11259333
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    ||||| |||||||||||||||||||||| || ||||||||||| |||||    
T  11259381 aatattacattattatagaaaaatttgtttatgagtataattggaataa 11259333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 45554309 - 45554349
Alignment:
Q  45 taagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  45554309 taagggtataattgaaataacaaaaaagtcagcccaaaatc 45554349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 2383119 - 2383048
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||| | |||| ||||||||||||| | |||||| || |||||||    
T  2383119 ccaagaatgtaacattaatataggaaaatttatttaagggtataattgaaattataaaaaattcagcccaaa 2383048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 10886573 - 10886515
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||||||||||||||||  |||| |||| |||||| ||||||  |||||||||||||||    
T  10886573 aatataacattattataataaaaattgtttaagagaataattagaataacaaaaaagtc 10886515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 20625348 - 20625286
Alignment:
Q  23 cattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||||||||||||||| |||| | ||||||||||||| ||||  |||||||| | ||||||||    
T  20625348 cattattatagaaaaaattgttttagagtataattgagataatgaaaaagtcagtccaaaatc 20625286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 33615274 - 33615236
Alignment:
Q  36 aaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  33615274 aaatttgtttaagagtataattggaataacaaaaaagtc 33615236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 744946 - 744995
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaa 60  Q
    |||| ||||||||||| ||||||| |||||| | ||||||||||||||||    
T  744946 ccaacaatataacattcttatagacaaatttatttaagagtataattgaa 744995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 16568287 - 16568218
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||||||||||| ||||||||||||| | |||  |||||||| |||||| |||||| ||| || ||||||    
T  16568287 aatataacattagtatagaaaaatttatttaaaggtataattaaaataataaaaaaatctccctaaaatc 16568218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 23914805 - 23914752
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||| ||||||||||| ||||||  |||||||| |||||||||||||| |||||    
T  23914805 ccaacaatataacattcttataggcaaatttgtttaagagtataattggaataa 23914752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 18470192 - 18470156
Alignment:
Q  49 agtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    ||||||||||||||||||||||||||  |||||||||    
T  18470192 agtataattgaaataacaaaaaagtcaacccaaaatc 18470156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 31525287 - 31525227
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| |||||||||||| ||||||||||||| | |||| ||||||||| ||| | ||||||    
T  31525287 ccaataatataacattaatatagaaaaatttatttaagggtataattggaattataaaaaa 31525227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 37110165 - 37110105
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||||  ||||||||| |||||||||| |||| ||| |||| |||||||||||||    
T  37110165 ccaataatatagtattattatataaaaatttgtttaagggtaaaattaaaataacaaaaaa 37110105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 45624790 - 45624746
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaa 60  Q
    ||||||||||||||||||| |||||||| ||||  ||||||||||    
T  45624790 aatataacattattatagacaaatttgtttaaggatataattgaa 45624746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 2087 - 2154
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||| || ||||||    
T  2087 aatataacattattatagaaaaatatgtttaagggtataattggaataacaaaaaagtatggccaaaa 2154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 2536598 - 2536655
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    ||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  2536598 aatataatattattatagaaaaatttgtttaaaaatataattgaaataacaaaaaagt 2536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 5493028 - 5493098
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||||||||||||||||||||||||||| |||| ||||||||  ||| | |||||| || |||||||||||    
T  5493028 aatataacattattatagaaaaatttgtttaagggtataattataattataaaaaattcagcccaaaatcc 5493098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 11573697 - 11573637
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||||||||||||||||||||||   | |||| ||||||||||||||||||||||    
T  11573697 ccaacaatataacattattatagaaaaataaatttaagggtataattgaaataacaaaaaa 11573637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15960356 - 15960424
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    ||||||| |||| ||||||||||||||| |||| ||||||||||||| | |||||| || |||||||||    
T  15960356 aatataaaattaatatagaaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaaat 15960424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 25342138 - 25342083
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||| | ||||||    
T  25342138 aatataacattaatatagaaaaatttgtttaagggtataattgaaattataaaaaa 25342083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 8174621 - 8174690
Alignment:
Q  18 tataacattattatagaaaaat--ttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    ||||||||||||||| |||||   |||| ||| | ||||| |||||||||||||||||| ||||||||||    
T  8174621 tataacattattataaaaaaaaaattgtttaaaaatataaatgaaataacaaaaaagtcagcccaaaatc 8174690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 11573407 - 11573370
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaag 48  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  11573407 ccaagaatataacatttttatagaaaaatttgtttaag 11573370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 20469612 - 20469685
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||| |||||||||||| ||||| ||||||||| |||| ||||||||| ||| | |||||| || ||| |||||    
T  20469612 ccaacaatataacattaatataggaaaatttgtttaagggtataattggaattataaaaaattcagcctaaaat 20469685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 7914616 - 7914676
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| |||||||||||||||||  ||||  ||| |||| ||||||||||||||| ||||||    
T  7914616 ccaacaatataacattattatatgaaaacatgtttaagggtataattgaaataaaaaaaaa 7914676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 38340135 - 38340063
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||| |||||||| ||||||||| ||||| |||  ||| ||||||||||||||||||||||||| ||||||||    
T  38340135 ccaataatataactttattataggaaaatatgttgaagggtataattgaaataacaaaaaagtcagcccaaaa 38340063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 26768212 - 26768282
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||||||| |||||| ||||||||| |||  |||||| ||||||||||||||| || |||||||||||    
T  26768212 aatataacattgttataggaaaatttgtttaaaggtataactgaaataacaaaaaaatcagcccaaaatcc 26768282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 42986636 - 42986566
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||| |||||||||  || |||||| |||| ||||||||||||||||||||||||| | |||||||||    
T  42986636 aatataaaattattataagaacatttgtttaagggtataattgaaataacaaaaaagtcagtccaaaatcc 42986566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 42560995 - 42561048
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  42560995 ccaacaatataacattattatagaaaaatttgtttaagggtataattggaataa 42561048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 4968738 - 4968801
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||| |||||||||||||||||  ||||||||| ||| |||||||||  |||||||||||||||    
T  4968738 ccaacaatataacattattataagaaaatttgtttaaaagtataattagaataacaaaaaagtc 4968801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 42561685 - 42561759
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||| ||||||||||| ||||||||||||||||  ||| | ||||||| |||||  |||||||| ||||||||||    
T  42561685 ccaacaatataacattgttatagaaaaatttgttgaagggaataattggaataatgaaaaagtcagcccaaaatc 42561759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 40368098 - 40368045
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||||| |||||    
T  40368098 ccaacaatataacattaatatagaaaaatttgtttaagggtataattggaataa 40368045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 43020581 - 43020509
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||| ||||||||||  ||||||||| |||||| ||||| ||||||| ||||||||||||||||  ||||||||    
T  43020581 ccaacaatataacatatttatagaaagatttgtttaaga-tataatttaaataacaaaaaagtcaacccaaaat 43020509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 4242097 - 4242049
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||||||||||||| ||||||||| |||||  |||||||    
T  4242097 ttattatagaaaaatttgtgtaagggtataattggaataaagaaaaagt 4242049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 8028719 - 8028779
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | ||||||    
T  8028719 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaa 8028779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 8574044 - 8573996
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||| |||| ||||||||    
T  8574044 ttattatagaaaaagttgtttaagagtataattgagataataaaaaagt 8573996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 43603054 - 43603002
Alignment:
Q  19 ataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||||||||| |||||||| |||| ||||||||||||||| ||||||    
T  43603054 ataaaattattatagacaaatttgtttaagggtataattgaaataataaaaaa 43603002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 3086123 - 3086181
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaa 70  Q
    |||| |||||||| || |||||||||| ||||| ||| ||||||||||||||||||||||    
T  3086123 ccaacaatataacgttgttatagaaaa-tttgtttaaaagtataattgaaataacaaaaa 3086181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 3156267 - 3156322
Alignment:
Q  17 atataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||||||| ||| ||  ||||||||| ||||| ||||||||||||||||||||||    
T  3156267 atataacatcattgtatgaaaatttgtttaagaatataattgaaataacaaaaaag 3156322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 33578793 - 33578832
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataa 55  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  33578793 aatataacattattatagaaaaatttgtttaagggtataa 33578832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 14487120 - 14487178
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaa 69  Q
    |||| ||||||||||||||||| |||||||||| ||  |||||||||| ||||| ||||    
T  14487120 ccaacaatataacattattatataaaaatttgtttattagtataattggaataataaaa 14487178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 16296167 - 16296212
Alignment:
Q  29 tatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    ||||||||| ||||| |||  |||||||||||||||||||||||||    
T  16296167 tatagaaaattttgtttaaaggtataattgaaataacaaaaaagtc 16296212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 5812144 - 5812192
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| || | |||||||||| || |||||||||||||||    
T  5812144 ttattatagaaaaaattatttaagagtatatttaaaataacaaaaaagt 5812192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8454457 - 8454509
Alignment:
Q  19 ataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||||||||  ||||||||| |||| ||||||||| ||||| ||||||    
T  8454457 ataacattattataagaaaatttgtttaagggtataattggaataaaaaaaaa 8454509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 33129436 - 33129381
Alignment:
Q  18 tataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||||||||| ||||  |||||| || ||||||||| ||||||||||||||||||||    
T  33129436 tataacattaatataagaaaatt-gtttaagagtatcattgaaataacaaaaaagtc 33129381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 34969385 - 34969433
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||||||||||||| |||||  |||||||    
T  34969385 ttattatagaaaaaattgtttaagagtataattggaataatgaaaaagt 34969433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 35056239 - 35056295
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||||||| |||||||| ||||||||| |||  || ||| ||||||||||||||||    
T  35056239 aatataacactattatagcaaaatttgtttaacggtgtaactgaaataacaaaaaag 35056295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 46273540 - 46273588
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||| || ||||||||||||| |||||||    
T  46273540 ttattatagaaaaaattgtttaagggtgtaattgaaataacgaaaaagt 46273588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 97044 - 96981
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||| ||||||| ||||||||| |||||||||| |||| |||||||||||||||| ||||||||    
T  97044 ccaacaatataatattattataaaaaaatttgtttaagggtataattgaaataaccaaaaagtc 96981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 38004402 - 38004332
Alignment:
Q  16 aatataacattatt-atagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||||||||||||| |||| |||||||||  ||| |||||||||||||||||||||| || ||||||||||    
T  38004402 aatataacattatttataggaaaatttgttcaagggtataattgaaataacaaaaaattcagcccaaaatc 38004332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 10981668 - 10981724
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    |||||||||||||||||  ||||||||| |||| ||||||||| |||||||||||||    
T  10981668 aatataacattattataagaaaatttgtttaagggtataattggaataacaaaaaag 10981724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 23315935 - 23315864
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  23315935 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 23315864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 28915616 - 28915574
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattg 58  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  28915616 aatataacattattataaaaaaatttgtttaagagtataattg 28915574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 4815916 - 4815856
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| |||||||||||||||||  ||||||||  |||| ||||||||| ||||||||||||    
T  4815916 ccaacaatataacattattatacgaaaatttgcttaagggtataattggaataacaaaaaa 4815856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7712976 - 7712908
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||||| |||||||||| ||||||| || ||||  ||||||||||| |||||||||||| || ||||||    
T  7712976 aatatagcattattataaaaaaattagtttaaggatataattgaaacaacaaaaaagtcagctcaaaat 7712908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32547389 - 32547437
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||||||||  |||||||    
T  32547389 ttattatagaaaaaattgtttaagagtataattgaaataatgaaaaagt 32547437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 43097072 - 43097140
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||| |||||| | |||||||||||||| |||| ||||||||  ||||| ||||||||| |||||||||    
T  43097072 aataaaacattttcatagaaaaatttgtttaagggtataatttgaataataaaaaagtcagcccaaaat 43097140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 7396823 - 7396784
Alignment:
Q  35 aaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7396823 aaaatttgtttaagggtataattgaaataacaaaaaagtc 7396784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 12294350 - 12294291
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaa 70  Q
    |||| ||||||| |||||||||  ||||||||| |||| ||||||||||||||| |||||    
T  12294350 ccaacaatataatattattatatgaaaatttgtttaagcgtataattgaaataaaaaaaa 12294291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 24670112 - 24670067
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaa 61  Q
    ||||||||||| ||||||| |||||||| ||||| |||||||||||    
T  24670112 aatataacattcttatagacaaatttgtttaagaatataattgaaa 24670067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2133567 - 2133519
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||| ||||  |||||||    
T  2133567 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaagt 2133519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 7456681 - 7456729
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||||||||||||||||||| ||||| | |||| ||||||||| |||||    
T  7456681 aatataacattattatagaataatttttctaagggtataattggaataa 7456729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 23431685 - 23431733
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||| |||||||||| |||| ||||||||    
T  23431685 ttattatagaaaaaattgtttaagggtataattgagataataaaaaagt 23431733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 23432210 - 23432258
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||  |||| ||||||||    
T  23432210 ttattatagaaaaagttgtttaagagtataattgggataataaaaaagt 23432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 48171819 - 48171787
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgt 43  Q
    |||| ||||||||||||||||||||||||||||    
T  48171819 ccaataatataacattattatagaaaaatttgt 48171787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 19346384 - 19346315
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    |||||||| |||||||| |||  ||||| |||| |||||||||||||||||| |||||| ||||||||||    
T  19346384 aatataaccttattataaaaatttttgtttaagggtataattgaaataacaacaaagtcagcccaaaatc 19346315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 29357184 - 29357257
Alignment:
Q  11 ccaagaatataacattattatagaaaa-atttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaa 83  Q
    |||| |||||||||||||||||||||| | | || |||  ||||||||||||||||||||||||| ||||||||    
T  29357184 ccaacaatataacattattatagaaaatactggtttaaaggtataattgaaataacaaaaaagtcagcccaaaa 29357257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 12650708 - 12650764
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||||| ||||||||| |||||||||| |||||||||||||  |||||||||||||    
T  12650708 aatataaaattattataaaaaaatttgtttaagagtataattagaataacaaaaaag 12650764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 5096548 - 5096619
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  5096548 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 5096619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 13640956 - 13640881
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||| |||||||||||||||||  ||||||||| || |  |||||||| ||||||||| ||||| |||||||||||    
T  13640956 ccaacaatataacattattataacaaaatttgtttagggatataattggaataacaaagaagtcagcccaaaatcc 13640881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 39753628 - 39753699
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||||||||||||| | || ||||||||||||| | |||||| || |||||||    
T  39753628 ccaagaatgtaacattaatatagaaaaatttgtttgagggtataattgaaattataaaaaattcagcccaaa 39753699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 13703332 - 13703262
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||| |||||||||  ||||||||| ||||  |||||||| ||||||||| ||||| |||||||||||    
T  13703332 aatataagattattataagaaaatttgtttaaggatataattggaataacaaagaagtcagcccaaaatcc 13703262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 25089160 - 25089110
Alignment:
Q  21 aacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||| ||||||    
T  25089160 aacattaatatagaaaaatttgtttaagggtataattgaaataataaaaaa 25089110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 9059349 - 9059401
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaata 63  Q
    |||| |||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  9059349 ccaacaatataacattaatatagaaaaatttgtttaacagtataattggaata 9059401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 3584171 - 3584096
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||| ||||||| |||||||||  ||||||||  |||| ||||||||| ||||||||||||| |  ||||||||||    
T  3584171 ccaacaatataatattattataagaaaatttgcttaagcgtataattggaataacaaaaaaggcaacccaaaatcc 3584096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 5318794 - 5318755
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataa 55  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  5318794 aatataacattattatagaaaaatttgtttcagagtataa 5318755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 35070984 - 35071039
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||||||||||||||| |||| | |||| |||||| || ||||||||||||    
T  35070984 aatataacattattatagaaatatttatttaagggtataactggaataacaaaaaa 35071039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 35097017 - 35097072
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||||||||| |||||||||| |||||| |||| |||||| || ||||||||||||    
T  35097017 aatataacatcattatagaaatatttgtttaagggtataactggaataacaaaaaa 35097072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 39617410 - 39617343
Alignment:
Q  17 atataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||||||||||| |||||||||||||| |||  |||  |||  ||||||||||||||| |||||||||    
T  39617410 atataacattatcatagaaaaatttgtttaaaggtaccattacaataacaaaaaagtcagcccaaaat 39617343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 10040857 - 10040930
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaat 84  Q
    |||| ||||||||||| |||||| ||||||||| |||| ||||||||  ||| |||||||| || |||| ||||    
T  10040857 ccaacaatataacatttttataggaaaatttgtttaagggtataattagaattacaaaaaattcagccccaaat 10040930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 20097945 - 20097990
Alignment:
Q  24 attattatagaaaaatttgtgtaagagtataattgaaataacaaaa 69  Q
    ||||||||||||||| |||| ||||||||||||||  |||||||||    
T  20097945 attattatagaaaaagttgtttaagagtataattgggataacaaaa 20097990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 33429162 - 33429105
Alignment:
Q  16 aatataacattattataga-aaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    ||||||||||||||||||| ||||||||| ||||  |||| ||| |||||||||||||    
T  33429162 aatataacattattatagaaaaaatttgtttaaggatatagttggaataacaaaaaag 33429105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 5468106 - 5468058
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||||||||||||||||||||||||| | || | ||||||||| |||||    
T  5468106 aatataacattattatagaaaaatttatttacgggtataattggaataa 5468058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 25610629 - 25610677
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||| |||||||||| ||||| |||||||    
T  25610629 ttattatagaaaaagttgtttaagggtataattgagataacgaaaaagt 25610677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 35791969 - 35791921
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||||||||||||||||| ||||||||| |||  |||||||| ||||||    
T  35791969 aatataacattattataggaaaatttgtttaaaggtataattaaaataa 35791921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38636382 - 38636434
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaa 68  Q
    |||||||||||||||||||| | ||||  |||| ||||||||| |||||||||    
T  38636382 aatataacattattatagaatattttgcttaagggtataattggaataacaaa 38636434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 45000987 - 45001035
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||| |||||||||| |||| ||||||||    
T  45000987 ttattatagaaaaagttgtttaagggtataattgagataataaaaaagt 45001035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 9051038 - 9050969
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    ||||||| |||||||||||||| ||||| |||||||||||||  ||||||||| ||||| || |||||||    
T  9051038 aatataatattattatagaaaattttgtttaagagtataattcgaataacaaataagtcagctcaaaatc 9050969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 28479565 - 28479496
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatc 85  Q
    ||||||| ||||||||| |||||||| | |||  ||||||||| ||||||||||||||||||| ||||||    
T  28479565 aatataatattattatataaaaatttatttaaatgtataattggaataacaaaaaagtctgcctaaaatc 28479496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 1592127 - 1592071
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaag 72  Q
    |||| ||||||||||||||||||||||| |||| ||||||||  |||||||||||||    
T  1592127 aatagaacattattatagaaaaatttgtttaagggtataattagaataacaaaaaag 1592071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 1584658 - 1584713
Alignment:
Q  31 tagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||||| |||||| |||| ||||||||||||||||||||||| | |||||||||||    
T  1584658 tagaaatatttgtttaagggtataattgaaataacaaaaaagacagcccaaaatcc 1584713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 9666185 - 9666130
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||||||||||||||| |||||| |||| ||||||  ||||||||||||||    
T  9666185 aatataacattattatagaaatatttgtttaagggtataaccgaaataacaaaaaa 9666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 17704331 - 17704276
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||||| |||||| ||||||||| |||||||| |||| |||||||||||||    
T  17704331 aatataacattgttatagtaaaatttgtttaagagtagaattaaaataacaaaaaa 17704276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 27175199 - 27175124
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    |||| ||||||||||||||||||||||  |||| |||  ||||||||| ||||||||||||  | |||||||||||    
T  27175199 ccaacaatataacattattatagaaaacattgtttaatggtataattggaataacaaaaaatccagcccaaaatcc 27175124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 27263866 - 27263937
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  27263866 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 27263937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 28394694 - 28394765
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  28394694 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 28394765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 31172326 - 31172397
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||||||||||||| | || ||||||||||||| | |||||| || |||||||    
T  31172326 ccaagaatgtaacattaatatagaaaaatttgtttgagggtataattgaaattataaaaaattcagcccaaa 31172397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 41879833 - 41879904
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  41879833 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 41879904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 31202058 - 31202001
Alignment:
Q  17 atataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||||||||| |||||  ||||||||| |||| |||||||| ||||||||||||||||    
T  31202058 atataacattgttataagaaaatttgtttaagggtataattaaaataacaaaaaagtc 31202001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 38629279 - 38629332
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  38629279 ccaacaatataacattattataggaaaatttgtttaagaatataactgaaataa 38629332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 21344917 - 21344877
Alignment:
Q  24 attattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  21344917 attattatagaaaaatttgtttaaaagtataattgaaataa 21344877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 6205869 - 6205916
Alignment:
Q  24 attattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    ||||||||| |||||||||| |||||||||||||  ||||||||||||    
T  6205869 attattatataaaaatttgtttaagagtataatttgaataacaaaaaa 6205916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 11487560 - 11487618
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaa 70  Q
    |||| |||||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||    
T  11487560 ccaataatataacattattataggaaaatttgtttaag-gtacaattgaaaaaacaaaaa 11487618  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 14930721 - 14930651
Alignment:
Q  17 atataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcca 87  Q
    ||||| ||||||||| | |||| |||| |||||||||||||| ||||| || ||||||  |||||||||||    
T  14930721 atataccattattatgggaaaaattgtttaagagtataattgtaataataataaagtcatcccaaaatcca 14930651  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 7464142 - 7464191
Alignment:
Q  24 attattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||||||||| |||| |||||||||| ||||  |||||||    
T  7464142 attattatagaaaaatttgtttaagggtataattgagataatgaaaaagt 7464191  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 38600655 - 38600708
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||| ||||||||||| |||||| ||||||||| ||||| ||||| ||||||||    
T  38600655 ccaacaatataacattgttataggaaaatttgtttaagaatataactgaaataa 38600708  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 40493892 - 40493855
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaat 62  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  40493892 ttattatagaaaaagttgtttaagagtataattgaaat 40493855  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 9523913 - 9523869
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaa 69  Q
    |||||||||||||| |||| |||| |||||||| |||||||||||    
T  9523913 ttattatagaaaaagttgtttaagggtataattaaaataacaaaa 9523869  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26647268 - 26647208
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||||  |||||||||||| ||||||| |||| |||||| |||||||| ||||||    
T  26647268 ccaaaaatatattattattatagaataatttgtttaagggtataactgaaataataaaaaa 26647208  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 26917806 - 26917758
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataa 64  Q
    |||||||||||||||||| ||||||||| |||| | |||| ||||||||    
T  26917806 aatataacattattatagtaaaatttgtttaagggcataactgaaataa 26917758  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 26918852 - 26918792
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaa 71  Q
    |||| ||||||  |||||||||||| ||||||| |||| |||||| |||||||| ||||||    
T  26918852 ccaaaaatatattattattatagaataatttgtttaagggtataactgaaataataaaaaa 26918792  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 39850864 - 39850816
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    ||||||||||||||||||| |||| |||||||||| |||  ||||||||    
T  39850864 ttattatagaaaaatttgtttaagggtataattgagatagtaaaaaagt 39850816  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 42027689 - 42027737
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| ||||||||||||||| ||||  |||||||    
T  42027689 ttattatagaaaaaattgtttaagagtataattgagataatgaaaaagt 42027737  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 42516219 - 42516171
Alignment:
Q  25 ttattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagt 73  Q
    |||||||||||||| |||| |||| |||||||||| |||| ||||||||    
T  42516219 ttattatagaaaaagttgtttaagggtataattgagataataaaaaagt 42516171  T

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Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 81855 - 81784
Alignment:
Q  11 ccaagaatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaa 82  Q
    |||||||| |||||||| ||||| ||||||||| |||| ||||||||||||| | |||||| || |||||||    
T  81855 ccaagaatgtaacattaatataggaaaatttgtttaagggtataattgaaattataaaaaattcagcccaaa 81784  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 53725 - 53667
Alignment:
Q  16 aatataacattattatagaaaaatttgtgtaagagtataattgaaataacaaaaaagtc 74  Q
    |||||||||||||||||||||||||||| |||   ||||||||||||||  ||||||||    
T  53725 aatataacattattatagaaaaatttgtttaaagatataattgaaataatgaaaaagtc 53667  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 36798 - 36749
Alignment:
Q  37 aatttgtgtaagagtataattgaaataacaaaaaagtctgcccaaaatcc 86  Q
    ||||||| |||||||||||||| || |||||||||||| || ||||||||    
T  36798 aatttgtttaagagtataattggaaaaacaaaaaagtcggctcaaaatcc 36749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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