View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5269_low_1 (Length: 722)

Name: NF5269_low_1
Description: NF5269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5269_low_1
NF5269_low_1
[»] chr2 (11 HSPs)
chr2 (183-713)||(14007430-14007962)
chr2 (492-602)||(45035155-45035265)
chr2 (378-479)||(20957437-20957538)
chr2 (493-602)||(45033361-45033470)
chr2 (381-479)||(20957612-20957710)
chr2 (494-602)||(17308689-17308797)
chr2 (527-602)||(1015756-1015831)
chr2 (490-596)||(3372458-3372564)
chr2 (381-489)||(17149055-17149163)
chr2 (484-587)||(33187188-33187291)
chr2 (532-602)||(30191620-30191690)
[»] chr3 (12 HSPs)
chr3 (378-596)||(26667004-26667223)
chr3 (378-506)||(25836367-25836495)
chr3 (498-602)||(27682197-27682301)
chr3 (527-602)||(41874545-41874620)
chr3 (498-602)||(28133726-28133830)
chr3 (381-488)||(9032830-9032937)
chr3 (378-475)||(548092-548187)
chr3 (492-602)||(4602293-4602403)
chr3 (412-480)||(43819944-43820012)
chr3 (492-602)||(4609105-4609215)
chr3 (498-595)||(26317951-26318048)
chr3 (492-533)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (378-603)||(6742425-6742653)
chr5 (492-602)||(10410798-10410908)
chr5 (378-489)||(4897423-4897532)
chr5 (368-475)||(21637272-21637381)
chr5 (492-591)||(10412371-10412470)
chr5 (385-506)||(33689869-33689990)
chr5 (498-602)||(8081508-8081612)
chr5 (527-602)||(25725808-25725883)
chr5 (378-487)||(33688153-33688262)
chr5 (527-602)||(25502025-25502100)
chr5 (495-602)||(25506938-25507045)
chr5 (529-596)||(40382763-40382830)
[»] chr8 (7 HSPs)
chr8 (380-602)||(35674837-35675058)
chr8 (484-602)||(30634229-30634347)
chr8 (497-589)||(35673345-35673437)
chr8 (381-478)||(29456284-29456381)
chr8 (527-602)||(1175148-1175223)
chr8 (497-594)||(1173513-1173610)
chr8 (378-413)||(35673477-35673512)
[»] chr7 (10 HSPs)
chr7 (378-489)||(29598097-29598208)
chr7 (368-489)||(21633313-21633436)
chr7 (527-595)||(29924665-29924733)
chr7 (368-489)||(21631352-21631467)
chr7 (378-489)||(21631122-21631225)
chr7 (510-595)||(21464528-21464615)
chr7 (426-507)||(3232944-3233025)
chr7 (385-479)||(21633093-21633179)
chr7 (368-453)||(9878298-9878384)
chr7 (426-475)||(29856101-29856150)
[»] chr6 (6 HSPs)
chr6 (378-487)||(30488432-30488541)
chr6 (484-603)||(15689026-15689145)
chr6 (378-451)||(25050859-25050932)
chr6 (442-574)||(9373599-9373730)
chr6 (484-595)||(34350341-34350452)
chr6 (378-458)||(26857816-26857895)
[»] chr4 (11 HSPs)
chr4 (381-506)||(42664932-42665057)
chr4 (492-596)||(28395559-28395667)
chr4 (382-489)||(10032679-10032785)
chr4 (378-450)||(42665175-42665247)
chr4 (378-489)||(18812662-18812774)
chr4 (535-603)||(4847687-4847755)
chr4 (368-451)||(18807515-18807599)
chr4 (428-479)||(5653307-5653358)
chr4 (378-489)||(8818744-8818853)
chr4 (379-418)||(19223142-19223181)
chr4 (414-492)||(8678562-8678640)
[»] scaffold0060 (1 HSPs)
scaffold0060 (368-478)||(9093-9205)
[»] chr1 (6 HSPs)
chr1 (382-489)||(1284831-1284937)
chr1 (484-603)||(44782182-44782301)
chr1 (498-602)||(46679708-46679812)
chr1 (403-489)||(33072760-33072845)
chr1 (379-489)||(10653488-10653594)
chr1 (378-473)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (382-489)||(9476-9582)
scaffold0245 (382-489)||(11098-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (382-489)||(9804-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (381-461)||(28412-28492)


Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 183 - 713
Target Start/End: Original strand, 14007430 - 14007962
Alignment:
Q  183 catgtaacaatgttagtctttcatcaggattcgatggaagatgaacaaaatcagtacaagcaaaagagggtatatgacttaatgacatcaccaacgtgca 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14007430 catgtaacaatgttagtctttcagcaggattcgatggaagatgaacaaaatcagtacaagcaaaagaggg-atatgacttaatgacatcaccaacgtgca 14007528  T
Q  283 tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtagtg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007529 tgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagacaaagtataattagataagcatggaacaaattaagcatactattagagtagtg 14007628  T
Q  383 aataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagacta----actcacccctataaataactctc 478  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    |||||||| ||||||||||||||    
T  14007629 aataaaccatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataactctc 14007728  T
Q  479 atcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaac 578  Q
    | |||||||||||||| ||||||||||||||||||||||| ||||   ||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  14007729 accattgtactatttttatatcttttattcatttctatctatgtc---actcctagagagaattagacaatccatctttccattgcatttgacctagaac 14007825  T
Q  579 catggaatcctttgattcctaacacatgcaatcttctatcaattagttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaat 678  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007826 catggaatcctttgattcataacacatgcaatcttctatcaattggttaaactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaat 14007925  T
Q  679 aacgtgttctagtttctc--tagatgtttagaataat 713  Q
    ||| ||||||||||||||  |||||||||||||||||    
T  14007926 aacatgttctagtttctctttagatgtttagaataat 14007962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 492 - 602
Target Start/End: Original strand, 45035155 - 45035265
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 591  Q
    ||||| |||||||||||||||  |||||||| || |||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45035155 tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatccttt 45035254  T
Q  592 gattcctaaca 602  Q
    ||||| |||||    
T  45035255 gattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 378 - 479
Target Start/End: Original strand, 20957437 - 20957538
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  20957437 tagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtct 20957536  T
Q  478 ca 479  Q
    ||    
T  20957537 ca 20957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 493 - 602
Target Start/End: Original strand, 45033361 - 45033470
Alignment:
Q  493 ttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttg 592  Q
    ||||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  45033361 ttcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T
Q  593 attcctaaca 602  Q
    |||| |||||    
T  45033461 attcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 381 - 479
Target Start/End: Original strand, 20957612 - 20957710
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 479  Q
    |||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  20957612 tgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 494 - 602
Target Start/End: Original strand, 17308689 - 17308797
Alignment:
Q  494 tcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttga 593  Q
    ||||||||||||| || || | |||| || || |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  17308689 tcatatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttga 17308788  T
Q  594 ttcctaaca 602  Q
    ||| |||||    
T  17308789 ttcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 1015756 - 1015831
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 596
Target Start/End: Complemental strand, 3372564 - 3372458
Alignment:
Q  490 attttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 589  Q
    |||||||||| |||||||||||| |||||||||  | ||||| ||||||||||| | |||| |||||||||||| |||||||||| ||| |||||||| |    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatctt 3372465  T
Q  590 ttgattc 596  Q
    |||||||    
T  3372464 ttgattc 3372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 381 - 489
Target Start/End: Complemental strand, 17149163 - 17149055
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 480  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| || ||| ||| ||| |||| ||||||||||| ||| |||| ||| |||| |||||    
T  17149163 tgaataaaccatagttagttgataggtaaattatggttagttggttgtttaagtaattaggagtcagttagactaattcatccctgtaagtaaccctcat 17149064  T
Q  481 cattgtact 489  Q
    |||||||||    
T  17149063 cattgtact 17149055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 587
Target Start/End: Complemental strand, 33187291 - 33187188
Alignment:
Q  484 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 583  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||| |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  33187291 tgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccattacatttgacctagaacaatgg 33187192  T
Q  584 aatc 587  Q
    ||||    
T  33187191 aatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 602
Target Start/End: Original strand, 30191620 - 30191690
Alignment:
Q  532 tagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    |||||||||||| | |||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  30191620 tagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcataaca 30191690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 1e-77; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 378 - 596
Target Start/End: Complemental strand, 26667223 - 26667004
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26667223 tagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactct 26667124  T
Q  478 catcattgtactattttcatatcttttattca-tttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaa 576  Q
    || |||||||| |||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |||||||| |||||||| ||| |    
T  26667123 caccattgtaccattttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctaga 26667024  T
Q  577 accatggaatcctttgattc 596  Q
    |||||| |||||||||||||    
T  26667023 accatgaaatcctttgattc 26667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 378 - 506
Target Start/End: Original strand, 25836367 - 25836495
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||||| | |||||||||||| |||||||||||||||  ||| || |||||||||||||    
T  25836367 tagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataactct 25836466  T
Q  478 catcattgtactattttcatatcttttat 506  Q
    || ||||||||| | ||  ||||||||||    
T  25836467 caccattgtactctcttgttatcttttat 25836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 498 - 602
Target Start/End: Original strand, 27682197 - 27682301
Alignment:
Q  498 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 597  Q
    |||||||||||||||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  27682197 atcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 27682296  T
Q  598 taaca 602  Q
    |||||    
T  27682297 taaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 41874545 - 41874620
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41874545 actcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 498 - 602
Target Start/End: Original strand, 28133726 - 28133830
Alignment:
Q  498 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 597  Q
    |||||||||||| ||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  28133726 atcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 28133825  T
Q  598 taaca 602  Q
    |||||    
T  28133826 taaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 381 - 488
Target Start/End: Complemental strand, 9032937 - 9032830
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 480  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||||||||||||||||||||  ||| |||||||| || |||     
T  9032937 tgaataaatcatagttagttgatatgaaaactatggttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcac 9032838  T
Q  481 cattgtac 488  Q
    ||||||||    
T  9032837 cattgtac 9032830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 378 - 475
Target Start/End: Original strand, 548092 - 548187
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataact 475  Q
    ||||||||||| |||| |||| ||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  548092 tagtgaataaatcatatttagataatg-gtaaactatgattagttggttggttaggtagttaagagttagttagactaactca-cactataaataact 548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 492 - 602
Target Start/End: Original strand, 4602293 - 4602403
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 591  Q
    |||||||||||||||| | ||  |||||||| || |||| ||||||||| || |||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  4602293 tttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatccttt 4602392  T
Q  592 gattcctaaca 602  Q
    ||||| |||||    
T  4602393 gattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 43820012 - 43819944
Alignment:
Q  412 tatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 480  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  43820012 tatgattagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcat 43819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 492 - 602
Target Start/End: Original strand, 4609105 - 4609215
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 591  Q
    |||||||||||||||||| ||  |||||||| || ||| |||||||||| || |||||  | ||||| ||||||||||| ||| ||| || |||||||||    
T  4609105 tttcatatcttttattcaattgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatccttt 4609204  T
Q  592 gattcctaaca 602  Q
    ||||| |||||    
T  4609205 gattcataaca 4609215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 595
Target Start/End: Complemental strand, 26318048 - 26317951
Alignment:
Q  498 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 595  Q
    |||||||||||||||||||  || | || ||||||  |||| | || |||||| |||||| ||||| ||||||  || ||||||| ||||||||||||    
T  26318048 atcttttattcatttctattgttctaatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttgatt 26317951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 492 - 533
Target Start/End: Original strand, 27972591 - 27972632
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactccta 533  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  27972591 tttcatatcttttattcatttctatatttgtgatgactccta 27972632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 378 - 603
Target Start/End: Original strand, 6742425 - 6742653
Alignment:
Q  378 tagtgaataaacca---tagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataac 474  Q
    ||||||||||||||   |||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||| | ||  |||||||||||    
T  6742425 tagtgaataaaccaatatagttaattaatatataaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataac 6742524  T
Q  475 tctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgaccta 574  Q
    |||||  ||||||||||||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||||||||| |||    
T  6742525 tctcactattgtactattttgatattttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatcta 6742624  T
Q  575 aaaccatggaatcctttgattcctaacac 603  Q
     ||| |||||||| |||||||| ||||||    
T  6742625 gaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 492 - 602
Target Start/End: Original strand, 10410798 - 10410908
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 591  Q
    ||||| |||||||||||||||  |||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410798 tttcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T
Q  592 gattcctaaca 602  Q
    ||||| |||||    
T  10410898 gattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 4897532 - 4897423
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4897532 tagtgaataaaccatagttagataatg-gtaaactatggttagttggttgattaggtagttaagagttagttagactaactca-ccctataaataactct 4897435  T
Q  478 catcattgtact 489  Q
    ||  ||||||||    
T  4897434 caatattgtact 4897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 21637381 - 21637272
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 465  Q
    ||||||||||||  ||||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| |    
T  21637381 actattagagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcaccctt 21637282  T
Q  466 ataaataact 475  Q
    ||||||||||    
T  21637281 ataaataact 21637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 492 - 591
Target Start/End: Original strand, 10412371 - 10412470
Alignment:
Q  492 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 591  Q
    |||||||||||||||||||||  |||||||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  10412371 tttcatatcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 385 - 506
Target Start/End: Original strand, 33689869 - 33689990
Alignment:
Q  385 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcatt 484  Q
    |||||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| | |||||||||||  ||| |||||||| ||||||  |||    
T  33689869 taaaccatagttagttaataagtaaactatggataattggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactatt 33689968  T
Q  485 gtactattttcatatcttttat 506  Q
    ||||||||||  ||||||||||    
T  33689969 gtactattttgttatcttttat 33689990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 498 - 602
Target Start/End: Original strand, 8081508 - 8081612
Alignment:
Q  498 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 597  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||     
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  598 taaca 602  Q
    |||||    
T  8081608 taaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 25725883 - 25725808
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  25725883 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 378 - 487
Target Start/End: Original strand, 33688153 - 33688262
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||||| | |||||||| |||| |||| |||| ||||    
T  33688153 tagtgattaaaccatagttagttaatatgtaaattatggttggttagttggttaggtatttaagagttactaagactaacccacctctattaatagctct 33688252  T
Q  478 catcattgta 487  Q
    || |||||||    
T  33688253 caccattgta 33688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 527 - 602
Target Start/End: Complemental strand, 25502100 - 25502025
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 495 - 602
Target Start/End: Complemental strand, 25507045 - 25506938
Alignment:
Q  495 catatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 594  Q
    ||||| |||||| || || | ||||||| || | ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  25507045 catattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttat 25506946  T
Q  595 tcctaaca 602  Q
    || |||||    
T  25506945 tcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 529 - 596
Target Start/End: Complemental strand, 40382830 - 40382763
Alignment:
Q  529 tcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattc 596  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  40382830 tcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattc 40382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 7e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 380 - 602
Target Start/End: Complemental strand, 35675058 - 35674837
Alignment:
Q  380 gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 479  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  35675058 gtgaataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactcactcctataaataactctca 35674959  T
Q  480 tc-attgtactattttca-tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaa 577  Q
     | ||||   |||| ||| | |||   |||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| || ||    
T  35674958 actattg---tattctcattgtctaaaattcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaa 35674862  T
Q  578 ccatggaatcctttgattcctaaca 602  Q
    ||||| ||||||  ||||| |||||    
T  35674861 ccatgcaatcctcagattcgtaaca 35674837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 484 - 602
Target Start/End: Complemental strand, 30634347 - 30634229
Alignment:
Q  484 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 583  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  30634347 tgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatag 30634248  T
Q  584 aatcctttgattcctaaca 602  Q
    ||||||||||||| |||||    
T  30634247 aatcctttgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 497 - 589
Target Start/End: Complemental strand, 35673437 - 35673345
Alignment:
Q  497 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 589  Q
    |||||||||||||||| ||||| ||| || | || |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||    
T  35673437 tatcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 381 - 478
Target Start/End: Complemental strand, 29456381 - 29456284
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 478  Q
    ||||| || |||||||||| |||| ||||||||| |||||||   |||||||||||||| |||||| |||||||||||||||| | ||||||||||||    
T  29456381 tgaatcaatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactcacccttgtaaataactctc 29456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 527 - 602
Target Start/End: Original strand, 1175148 - 1175223
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 602  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||| |||||| ||||||||| |||| |||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 594
Target Start/End: Original strand, 1173513 - 1173610
Alignment:
Q  497 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 594  Q
    |||||||||| || || | |||| || || ||||||||||||||||| |||||| || ||| |||||||||||| ||| ||  |||||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttgat 1173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 413
Target Start/End: Complemental strand, 35673512 - 35673477
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaacta 413  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673512 tagtgaataaaccatagttagttaatatgtaaacta 35673477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 29598208 - 29598097
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29598208 tagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaataactct 29598109  T
Q  478 catcattgtact 489  Q
    || |||| ||||    
T  29598108 caccattatact 29598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 368 - 489
Target Start/End: Complemental strand, 21633436 - 21633313
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 465  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| ||||| ||    
T  21633436 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttaggtggttaggagttagttatactaattcaccact 21633337  T
Q  466 ataaataactctcatcattgtact 489  Q
    |||||||||| ||| |||||||||    
T  21633336 ataaataactatcaccattgtact 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 527 - 595
Target Start/End: Original strand, 29924665 - 29924733
Alignment:
Q  527 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 595  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  29924665 actcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctttgatt 29924733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 368 - 489
Target Start/End: Complemental strand, 21631467 - 21631352
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 465  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||        ||||||||||||||||||||||||    
T  21631467 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccct 21631376  T
Q  466 ataaataactctcatcattgtact 489  Q
    ||||||||| |||| |||||||||    
T  21631375 ataaataaccctcaccattgtact 21631352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 21631225 - 21631122
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||  ||||||        |||||||||||||||||||||||||||||||||| ||    
T  21631225 tagtgagtaaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactaactcacccctataaataaccct 21631134  T
Q  478 catcattgtact 489  Q
    || || ||||||    
T  21631133 caccagtgtact 21631122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 510 - 595
Target Start/End: Original strand, 21464528 - 21464615
Alignment:
Q  510 tttctatctttgtcataactcctagag--agaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 595  Q
    |||||| |||||| || ||||||||||  |||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21464528 tttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatt 21464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 426 - 507
Target Start/End: Original strand, 3232944 - 3233025
Alignment:
Q  426 tggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttatt 507  Q
    |||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| | | ||  |||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatcttttatt 3233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 385 - 479
Target Start/End: Complemental strand, 21633179 - 21633093
Alignment:
Q  385 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 479  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||| |||||||||||||||||| ||||    
T  21633179 taaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactatctcacccctataaataaccctca 21633093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 9878384 - 9878298
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagac 453  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||  | ||||| |||||| |||||||||||||    
T  9878384 actattagagtatagtgaataaaccataggtagttaatatataaactatggttagttgtat-gttagatagttaggagttagttagac 9878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 475
Target Start/End: Complemental strand, 29856150 - 29856101
Alignment:
Q  426 tggttaggtagttaagagttagttagactaactcacccctataaataact 475  Q
    |||||||||||||| ||||||||||||| |||||||  ||||||||||||    
T  29856150 tggttaggtagttaggagttagttagaccaactcactactataaataact 29856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 378 - 487
Target Start/End: Original strand, 30488432 - 30488541
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  30488432 tagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagctct 30488531  T
Q  478 catcattgta 487  Q
    || |||||||    
T  30488532 caccattgta 30488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 484 - 603
Target Start/End: Original strand, 15689026 - 15689145
Alignment:
Q  484 tgtactattttc-atatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatg 582  Q
    |||||||||||| || | |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  15689026 tgtactattttctatcttttttattcatttctatctttgtgatgactc-tagagagaattacacaatctatctttccattgcatttgacctagaatcatg 15689124  T
Q  583 gaatcctttgattcctaacac 603  Q
    |||||||||||||| ||||||    
T  15689125 gaatcctttgattcataacac 15689145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 25050859 - 25050932
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 451  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25050859 tagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttag 25050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 442 - 574
Target Start/End: Complemental strand, 9373730 - 9373599
Alignment:
Q  442 agttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaat 541  Q
    ||||||||||||| ||  || | ||||||||||||| |  |||||||| | | || ||||||||||||||| ||||||||| || ||||||| ||| |||    
T  9373730 agttagttagacttaccgactcttataaataactcttacaattgtactctct-cacatcttttattcatttatatctttgttatgactcctatagaaaat 9373632  T
Q  542 tacacaatccatctttccattgcatttgaccta 574  Q
    |||||| || |||||||||||||||||||||||    
T  9373631 tacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 484 - 595
Target Start/End: Complemental strand, 34350452 - 34350341
Alignment:
Q  484 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 583  Q
    ||||||||||   |||||||||| || || | |||| || || ||||||| ||||||||||| || | || ||||| ||| |||||||||| ||||||||    
T  34350452 tgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatgg 34350353  T
Q  584 aatcctttgatt 595  Q
    ||||||||||||    
T  34350352 aatcctttgatt 34350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 458
Target Start/End: Original strand, 26857816 - 26857895
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaact 458  Q
    |||||||||| |||||||||| | ||  ||||| ||  |||| |||| |||||||||||||||||||||||||||||||||    
T  26857816 tagtgaataagccatagttagatgatg-gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 381 - 506
Target Start/End: Original strand, 42664932 - 42665057
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 480  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||  |||||     
T  42664932 tgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcacccttataaatagttctcac 42665031  T
Q  481 cattgtactattttcatatcttttat 506  Q
     |||||||||| ||  ||||||||||    
T  42665032 aattgtactatcttgttatcttttat 42665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 492 - 596
Target Start/End: Complemental strand, 28395667 - 28395559
Alignment:
Q  492 tttcatatcttttattcatttctatct----ttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 587  Q
    |||||||||||||||||||||||||||    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28395667 tttcatatcttttattcatttctatctatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatc 28395568  T
Q  588 ctttgattc 596  Q
    |||||||||    
T  28395567 ctttgattc 28395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 382 - 489
Target Start/End: Complemental strand, 10032785 - 10032679
Alignment:
Q  382 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 481  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||      
T  10032785 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactca-ccctataaataactctcact 10032687  T
Q  482 attgtact 489  Q
    ||||||||    
T  10032686 attgtact 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 378 - 450
Target Start/End: Complemental strand, 42665247 - 42665175
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 450  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   || ||||||||||||||||||||||    
T  42665247 tagtgaataaaccatagttagttaatatgtaaattatggttagttatttgtttaggtagttaagagttagtta 42665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 18812774 - 18812662
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta--gactaactcacccctataaataact 475  Q
    |||||||||||||||| |||| |||||||||||||||||||||||   | |||||||||||||||||||||||   ||||||||| | ||||||||| ||    
T  18812774 tagtgaataaaccataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagttacgaactaactca-ctctataaatatct 18812676  T
Q  476 ctcatcattgtact 489  Q
    ||||  ||||||||    
T  18812675 ctcactattgtact 18812662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 603
Target Start/End: Complemental strand, 4847755 - 4847687
Alignment:
Q  535 agagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacac 603  Q
    ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4847755 agagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacac 4847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 451
Target Start/End: Complemental strand, 18807599 - 18807515
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 451  Q
    ||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  18807599 actattagagtatagtgaataaaccataactagataatatgtaaactatggttagttacttggttaggtag-taagagttagttag 18807515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 5653358 - 5653307
Alignment:
Q  428 gttaggtagttaagagttagttagactaactcacccctataaataactctca 479  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  5653358 gttaggtagttaggagttagttatactaactcacccctataaataagtctca 5653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 489
Target Start/End: Complemental strand, 8818853 - 8818744
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 477  Q
    ||||||||||| ||| ||||||||||| ||||||||  ||| ||| | |||||| |||||||| | ||||||||||||||||| |  |||||| ||||||    
T  8818853 tagtgaataaatcatggttagttaata-gtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactcatctttataaa-aactct 8818756  T
Q  478 catcattgtact 489  Q
     |||||| ||||    
T  8818755 tatcattatact 8818744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 19223181 - 19223142
Alignment:
Q  379 agtgaataaaccatagttagttaatatgtaaactatggtt 418  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  19223181 agtgaataaaccatagttagttaatatataaactatggtt 19223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 414 - 492
Target Start/End: Original strand, 8678562 - 8678640
Alignment:
Q  414 tggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactatt 492  Q
    ||||| ||||| ||| ||||||||||  |||||||||| ||||| ||||||||||||||||| |||  ||| |||||||    
T  8678562 tggttggttggttggctaggtagttagcagttagttagtctaacccacccctataaataactttcactattatactatt 8678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 368 - 478
Target Start/End: Complemental strand, 9205 - 9093
Alignment:
Q  368 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 465  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  9205 actattagagtatagtgaataaaccatagttagtttatatgtgaactatggttagttgtttggttaggtagttaggagttagttacactaactcacccct 9106  T
Q  466 ataaataactctc 478  Q
    |||||||||||||    
T  9105 ataaataactctc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 1284831 - 1284937
Alignment:
Q  382 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 481  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  1284831 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 1284929  T
Q  482 attgtact 489  Q
    ||||||||    
T  1284930 attgtact 1284937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 484 - 603
Target Start/End: Complemental strand, 44782301 - 44782182
Alignment:
Q  484 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 583  Q
    ||||||||||   |||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44782301 tgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatgg 44782202  T
Q  584 aatcctttgattcctaacac 603  Q
    |||||||| |||| ||||||    
T  44782201 aatcctttaattcataacac 44782182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 498 - 602
Target Start/End: Original strand, 46679708 - 46679812
Alignment:
Q  498 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 597  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||     
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 46679807  T
Q  598 taaca 602  Q
    |||||    
T  46679808 taaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 489
Target Start/End: Original strand, 33072760 - 33072845
Alignment:
Q  403 tatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtact 489  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||  ||||||||    
T  33072760 tatgtaaactatggttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 10653488 - 10653594
Alignment:
Q  379 agtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 478  Q
    ||||||||||  |||||||||| ||| ||||| |||||||||||||    |||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  10653488 agtgaataaagtatagttagtttatacgtaaattatggttagttgg----ttaggtggttaagagttagttagactaactcacccctgtaaatagctctc 10653583  T
Q  479 atcattgtact 489  Q
    |  ||||||||    
T  10653584 acaattgtact 10653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 41892084 - 41892178
Alignment:
Q  378 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataa 473  Q
    |||||||||||||| |||||||| ||| || || |||| |||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41892084 tagtgaataaacca-agttagttgataggtgaagtatgattagttggttggttaggtagttgggagttagttatactaactcacccctataaataa 41892178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 9476 - 9582
Alignment:
Q  382 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 481  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9476 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9574  T
Q  482 attgtact 489  Q
    ||||||||    
T  9575 attgtact 9582  T

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Target: scaffold0245; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 11098 - 11204
Alignment:
Q  382 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 481  Q
    ||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  11098 gaataaaccatagttagttgagatataaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 11196  T
Q  482 attgtact 489  Q
    ||||||||    
T  11197 attgtact 11204  T

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Target: scaffold0229 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 382 - 489
Target Start/End: Original strand, 9804 - 9910
Alignment:
Q  382 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 481  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9804 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9902  T
Q  482 attgtact 489  Q
    ||||||||    
T  9903 attgtact 9910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 381 - 461
Target Start/End: Original strand, 28412 - 28492
Alignment:
Q  381 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcac 461  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||    
T  28412 tgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttagattaactcac 28492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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