View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270-Insertion-1 (Length: 697)
Name: NF5270-Insertion-1
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 350 - 694
Target Start/End: Original strand, 34864194 - 34864546
Alignment:
| Q |
350 |
attttgtcttaaattaaaacgaatttttgatnnnnnnnnn-tcttgggaaaattacactaacctcccctgaggtatacgtaaatgtaacttacacccctt |
448 |
Q |
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| T |
34864194 |
attttgtcttaaattaaaacgaatttttgataaaaaaaaaatcttgggaaaattacactaacctcccctgagatatacgtaaatgtaacttacacccctt |
34864293 |
T |
|
| Q |
449 |
ctattttataacttagcaaatacctccc----------gttaattggctctcaaaacccctataactaacgtccacttaactttggccaacatttgtgtt |
538 |
Q |
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| T |
34864294 |
ctattttataacttagcaaatacctcccttatttgtttgttaattggctctccaaacccctataactaacgtccacttaactttggtcaacatttgtgtt |
34864393 |
T |
|
| Q |
539 |
tgacatctct--atgtaaccgatatgatatacaagaggtaaccaacaaaaagttccactgctgttaatacatcaattccagctgatgatgatataccaat |
636 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34864394 |
tgacatctctctatgtaaccgata-----tacaagaggtaaccaacaaaaagttccactgctgttaatacatcaattccagctgatgatgatataccaat |
34864488 |
T |
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| Q |
637 |
gaaaagatttagaccagacaagctaagcacatatgaatctgtgacagataaattatca |
694 |
Q |
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| T |
34864489 |
gaaaagatttagaccaaacaagctaagcacatatgaatctgtgacagataaattatca |
34864546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 34863842 - 34864054
Alignment:
| Q |
8 |
aatagttggagcagaaacggcgtcgttagaggaaaataagttccggtgactctgaggtcgaacaacttccattgctttctcttgcggtgacgaaggtaga |
107 |
Q |
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| T |
34863842 |
aatagttggagcagaaacggcgtcgttagaggaaaataagttccggtgactctgaggtcgaacaacttccattgctttctcttgcggtgacgaaggtaga |
34863941 |
T |
|
| Q |
108 |
acagtgaaatgctatgtcaatctgtgactcgtttgagttgctgatttccttccactttgtgaaattgtcgcgccaaattattgagccc-gggtacaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34863942 |
acagtgaaatgctatgtcaatctgtgactcgtttgagttgctgatttccttccactttgtgaaattgtcgcgccaaattattgagcccggggtacaaaat |
34864041 |
T |
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| Q |
207 |
ggcgggaaaatta |
219 |
Q |
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| T |
34864042 |
ggcgggaaaatta |
34864054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 34864086 - 34864126
Alignment:
| Q |
251 |
ggaaaattacattcgaatttaagtcttaagtatattagttt |
291 |
Q |
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| T |
34864086 |
ggaaaattacattcgaatttaagttttaagtatattagttt |
34864126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 460
Target Start/End: Original strand, 43691994 - 43692060
Alignment:
| Q |
394 |
gggaaaattacactaacctcccctgaggtatacgtaaatgtaacttacaccccttctattttataac |
460 |
Q |
| |
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|||||||||||||||||||||||| | || || |||||| |||||||||||||||||||| |||| |
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| T |
43691994 |
gggaaaattacactaacctcccctaaagtttatttaaatgacacttacaccccttctattttttaac |
43692060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 52282261 - 52282289
Alignment:
| Q |
394 |
gggaaaattacactaacctcccctgaggt |
422 |
Q |
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| T |
52282261 |
gggaaaattacactaacctcccctgaggt |
52282289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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