View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270-Insertion-13 (Length: 217)
Name: NF5270-Insertion-13
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 960334 - 960539
Alignment:
| Q |
11 |
acacataagataagttctctcatctcaaccgattttttcatatgcaagagctggaaattggactctaaccacttatttaaggagctctaatctcttacca |
110 |
Q |
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| T |
960334 |
acacataagataagttctctcatctcaatccattttttcatatgcaagagctgaagattgaaccctaaccacttgtttaaggagctctaatctcttacca |
960433 |
T |
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| Q |
111 |
tttaaatcaatttattgttggattaaaagtataattgtaaccccttatgtgaagctgagttttggagctactctaaagagaaagcagtattatactccaa |
210 |
Q |
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| T |
960434 |
tttaaaccaatttattgttggattaaaagtataa-tgtaaccatttatatgaagttgagttttggagcttctctaaagagaaagcagtattatacttaaa |
960532 |
T |
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| Q |
211 |
tttattg |
217 |
Q |
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| T |
960533 |
tttattg |
960539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 5632921 - 5632889
Alignment:
| Q |
99 |
aatctcttaccatttaaatcaatttattgttgg |
131 |
Q |
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| T |
5632921 |
aatctcttaccatttaaatcaatttattgttgg |
5632889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 9798076 - 9798034
Alignment:
| Q |
87 |
ttaaggagctctaatctcttaccatttaaatcaatttattgtt |
129 |
Q |
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| T |
9798076 |
ttaaggagctcaaatctcttaccacttaaattaatttattgtt |
9798034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 6743256 - 6743224
Alignment:
| Q |
99 |
aatctcttaccatttaaatcaatttattgttgg |
131 |
Q |
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| T |
6743256 |
aatctcttaccatttgaatcaatttattgttgg |
6743224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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