View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270-Insertion-2 (Length: 513)
Name: NF5270-Insertion-2
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 48167115 - 48166610
Alignment:
| Q |
8 |
gaccacttggcaaaacacctctaaacacttcacctgcactcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttt |
107 |
Q |
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| T |
48167115 |
gaccacttggcaaaacacctctaaacacttcacccgcactcccgcgtccaaggtttatcttttcattttcaaaattcatggcattttcaatttcagtttt |
48167016 |
T |
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| Q |
108 |
tgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaata |
207 |
Q |
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| T |
48167015 |
tgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacattttaccagaaaagcaata |
48166916 |
T |
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| Q |
208 |
atcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacgaaattatgtcaatttcattgtta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48166915 |
atcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacaaaattatgtcaatttcattgtta |
48166816 |
T |
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| Q |
308 |
gtttatttatgacagtctacaccattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggacttaccaaaaagtcaggtc |
407 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48166815 |
gtttatttatgacaatctacaccattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggacttaccaaaaagtcaggtc |
48166716 |
T |
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| Q |
408 |
aaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagcctagcaaagtttaacctagtcta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48166715 |
aaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagcctagcaaagtttaacctagtcta |
48166616 |
T |
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| Q |
508 |
ttttca |
513 |
Q |
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| T |
48166615 |
ttttca |
48166610 |
T |
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