View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270-Insertion-3 (Length: 489)
Name: NF5270-Insertion-3
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-3 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 7 - 489
Target Start/End: Original strand, 23849996 - 23850478
Alignment:
| Q |
7 |
agataaagacaatcatgtttcacaaatcaacagggcttcccgtacatattttctttaacctattttgttacattttctttaaaaccaatgaatttaaagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23849996 |
agataaagacaatcatgtttcacaaatcaacagggcttcccgtacatattttctttaacctattttgttacattttctttaaaaccaatgaatttaaagt |
23850095 |
T |
|
| Q |
107 |
aagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagtaaaaccacaacttctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23850096 |
aagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagtaaaaccacaacttctc |
23850195 |
T |
|
| Q |
207 |
actcctattttgtttaccatcatcatcataatctccactttcatctctatcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23850196 |
actcctattttgtttaccatcatcatcatcatctccactttcatctctatcatcagcatcacaatgattcggcaatggtgcaccacaaagaaacttgttt |
23850295 |
T |
|
| Q |
307 |
ccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23850296 |
ccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggacaagtctaggtgagttagaa |
23850395 |
T |
|
| Q |
407 |
aagttaaactagacatggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtgacctcatgtcc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23850396 |
aagttaaactagacatggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtgacttcatgtcc |
23850478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 92 - 488
Target Start/End: Original strand, 23749377 - 23749776
Alignment:
| Q |
92 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
191 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||| ||| || ||||||| || || |||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
23749377 |
caatgaatttgaagtaagcaaacctccaacccttcttcaacaagaaaactccaataaaaacccaaaagccagtagcaaatccaagtgctaccacaaagta |
23749476 |
T |
|
| Q |
192 |
aaaccacaacttctcactcctattttgtttaccatca---tcatcataatctccactttcatctctatcatcagcatcacaatgattcggcaatggtgca |
288 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| | |||||||||| |
|
|
| T |
23749477 |
aaaccacaatttctcactcctattttgtttaccatcaccatcatcatcatctccactttcatctctgtcatcagcatcacaatgattagacaatggtgca |
23749576 |
T |
|
| Q |
289 |
ccacaaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggaca |
388 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23749577 |
ccacaaagaaatttgtttccatcatatatcgatggatcaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggaca |
23749676 |
T |
|
| Q |
389 |
agtctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtgacctcatgtc |
488 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
23749677 |
agtttaggtgagctagaaaagttaaactagacatggtgtttggaatcgagcttgaaagttgatcatgagagaaatccaaagattcaagtaacttcatgtc |
23749776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 92 - 489
Target Start/End: Original strand, 22616782 - 22617170
Alignment:
| Q |
92 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
191 |
Q |
| |
|
||||||| ||||||||||||| ||||| || |||||||| ||| || ||||||| || || |||||||||| | |||||||||| |||||||||||| || |
|
|
| T |
22616782 |
caatgaaattaaagtaagcatccctccgacccttcttcaacaagaaaactccaataaaaacccaaaagccagtagcaaatccaattgctacaacaaaata |
22616881 |
T |
|
| Q |
192 |
aaaccacaacttctcactcctattttgtttaccatcatcatcataatctccactttcatctctatcatcagcatcacaatgattcggcaatggtgcacca |
291 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||| |||| ||| ||| ||||| |||||||||||| |
|
|
| T |
22616882 |
aaaccacagtttctcagccctatcatgtttaccatcatcatc------tccactttcatctctattatcaacatggcaacgattcaacaatggtgcaccg |
22616975 |
T |
|
| Q |
292 |
caaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggacaagt |
391 |
Q |
| |
|
|||||| | ||||| ||| |||| || ||||||| | |||| ||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
22616976 |
caaagatatttgttgccaacataaatagatggatca---ttaaatgttaaaaactggtttccttgtggaattggtcctgaaaggttgttgtaggacaagt |
22617072 |
T |
|
| Q |
392 |
ctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtgacctcatgtcc |
489 |
Q |
| |
|
||| || |||||| ||||||||||||||||||| ||||||||||| |||||||||| | ||||||| ||||| |||||||||||| |||||||| |
|
|
| T |
22617073 |
ttagtacagatagaaatgttaaactagacatggtgtgtggaattgagcctgaaagttgaccctgagagaggtccaacgattcaagtgacttcatgtcc |
22617170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 92 - 450
Target Start/End: Complemental strand, 20574570 - 20574218
Alignment:
| Q |
92 |
caatgaatttaaagtaagcatgcctccaactcttcttcagcaacaacactccaacaacaagccaaaagccactggcaaatccaagtgctacaacaaagta |
191 |
Q |
| |
|
||||||||||||||||||||||||| | || |||||||| ||| || ||||||| || | |||||| ||| | ||||| |||||| |||| |||||||| |
|
|
| T |
20574570 |
caatgaatttaaagtaagcatgccttcgacccttcttcaacaagaaaactccaataaagacccaaaacccagtagcaaacccaagtactaccacaaagta |
20574471 |
T |
|
| Q |
192 |
aaaccacaacttctcactcctattttgtttaccatcatcatcataatctccactttcatctctatcatcagcatcacaatgattcggcaatggtgcacca |
291 |
Q |
| |
|
||||||||| |||||| | |||| ||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||| |
|
|
| T |
20574470 |
aaaccacaatttctcagttctatcatgtttactatcatcatcat---ctccactttcatctctatcatcaacatggcaatgattcgacagtggtgcacca |
20574374 |
T |
|
| Q |
292 |
caaagaaacttgtttccagcatatattgatggataaatattaagtgtaaaaaattggtttccttgtggaactggtcctgaaagattgttgtaggacaagt |
391 |
Q |
| |
|
|||||| | ||||| ||| |||| || ||||||| | |||||||| || || |||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20574373 |
caaagatatttgttgccaacataaatagatggatca---ttaagtgttaagaactggtttccttgtggaatcggtcctgaaaggttgttgtaggacaagt |
20574277 |
T |
|
| Q |
392 |
ctaggtgagttagaaaagttaaactagacatggtgtttggaattgagcttgaaagttga |
450 |
Q |
| |
|
||| || ||||||||||||| |||||||||||| |||||||| || |||||||||| |
|
|
| T |
20574276 |
ttagtacagatagaaaagttaaattagacatggtgtatggaattgggcctgaaagttga |
20574218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University