View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270-Insertion-4 (Length: 365)

Name: NF5270-Insertion-4
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270-Insertion-4
NF5270-Insertion-4
[»] chr1 (4 HSPs)
chr1 (9-365)||(9883290-9883646)
chr1 (179-361)||(9260708-9260883)
chr1 (292-365)||(31917025-31917098)
chr1 (280-365)||(9851181-9851266)
[»] chr6 (2 HSPs)
chr6 (275-341)||(28912939-28913005)
chr6 (297-341)||(22427125-22427169)
[»] chr4 (3 HSPs)
chr4 (278-338)||(19100095-19100155)
chr4 (276-341)||(19314599-19314664)
chr4 (296-358)||(19328194-19328256)
[»] scaffold0050 (1 HSPs)
scaffold0050 (238-361)||(33407-33530)
[»] chr2 (1 HSPs)
chr2 (292-362)||(33851550-33851620)
[»] chr3 (1 HSPs)
chr3 (292-363)||(21304480-21304551)
[»] chr5 (1 HSPs)
chr5 (296-341)||(26332609-26332654)
[»] scaffold0032 (1 HSPs)
scaffold0032 (237-341)||(91723-91827)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 9883290 - 9883646
Alignment:
Q  9 caacaagagtacaaacattacgacgtaataagaaaattataatattctttgaaagataattatttttcaacttgagcttttataaagaattcacaaatac 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9883290 caacaagagtactaacattacgacgtaataagaaaattataatattctttgaaacataattatttttcaacttgagcttttataaagaattcacaaatac 9883389  T
Q  109 cattaacacactttgcaaatggaggaggcaacggcaccggacaatcatcatcagaaacgcatggaaaggtagctatatagacaaataagaaaaatggata 208  Q
    ||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883390 catcaacacactttgcaaatggaggaggcaatggcactggacaatcatcatcagaaacgcatggaaaggtagctatatagacaaataagaaaaatggata 9883489  T
Q  209 ttactcaaatgtgaacaaaaaatattgttataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883490 ttactcaaatgtgaacaaaaaatattgttataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattg 9883589  T
Q  309 agatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcct 365  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  9883590 agatagaaagatgattaaagcataaacaaacacacgaatttgagacatatttttcct 9883646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 361
Target Start/End: Original strand, 9260708 - 9260883
Alignment:
Q  179 agctatatagacaaataagaaaaatggatat--tactcaaatgtgaacaaaaaatattgttataagatatatttgaaaattagaaaatgatgtgaaaaat 276  Q
    ||||| |||||||| ||||||||||| ||||  ||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||| ||||||||||    
T  9260708 agctacatagacaattaagaaaaatgaatatactactcaaatgtgaacaaaaaataatgttataagatagatttgcaaaatagaaaatggtgtgaaaaat 9260807  T
Q  277 gacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttt 361  Q
    ||||||| ||         ||||||| |||||||||||||||||| | |||||||||| ||| | | || |||||| ||||||||    
T  9260808 gacatacctg---------caacaagcaattgagatagaaagatggttaaagcataaaaaaatacaagattttgagccatatttt 9260883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 31917098 - 31917025
Alignment:
Q  292 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcct 365  Q
    ||||||||||||||| |||| | ||||||||| |||||||||||||| ||  ||||||||  ||||||||||||    
T  31917098 gttacaacaagaaatagagaaataaagatgatcaaagcataaacaaatatgagaatttgaatcatatttttcct 31917025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 9851266 - 9851181
Alignment:
Q  280 atacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcct 365  Q
    |||||| |||| | ||||||||||  | ||||||||| |||||| |||||||||| ||| ||  | ||||||| ||||||||||||    
T  9851266 atacttttacttgatacaacaagacgtagagatagaacgatgatcaaagcataaataaatatgagtatttgagccatatttttcct 9851181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 341
Target Start/End: Complemental strand, 28913005 - 28912939
Alignment:
Q  275 atgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacat 341  Q
    ||||| ||||| |||| ||||||| |||||||||||| ||||||||||| ||| |||||||||||||    
T  28913005 atgacttacttctactggttacaataagaaattgagaaagaaagatgatcaaaacataaacaaacat 28912939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 22427169 - 22427125
Alignment:
Q  297 aacaagaaattgagatagaaagatgataaaagcataaacaaacat 341  Q
    ||||| |||| |||||||||||||||| |||||||||| ||||||    
T  22427169 aacaacaaatagagatagaaagatgatgaaagcataaagaaacat 22427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 19100155 - 19100095
Alignment:
Q  278 acatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaa 338  Q
    |||||||| |||| |||| ||||||||||||||| ||||| ||||| ||||||||||||||    
T  19100155 acatacttctacttgttataacaagaaattgagaaagaaaaatgatcaaagcataaacaaa 19100095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 19314664 - 19314599
Alignment:
Q  276 tgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacat 341  Q
    ||||||||||||| |  ||||||||| ||||||||| ||||||||||| | |||||||| ||||||    
T  19314664 tgacatacttgtattgattacaacaaaaaattgagagagaaagatgatcagagcataaataaacat 19314599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 19328256 - 19328194
Alignment:
Q  296 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatat 358  Q
    ||||||||||| | || ||||||||||| |||||||||| |||||||  |||||||| |||||    
T  19328256 caacaagaaatggggaaagaaagatgatcaaagcataaaaaaacataataatttgagccatat 19328194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 33530 - 33407
Alignment:
Q  238 ataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaa 337  Q
    |||| ||| ||| ||||||| ||||||| ||| |||||| |||||| | || | ||| ||||| ||||| |||| ||||||||||| ||| ||||| |||    
T  33530 ataatataaattagaaaatttgaaaatgttgttaaaaataacatacgtatatttgtttcaacatgaaatagagaaagaaagatgatcaaaacataagcaa 33431  T
Q  338 acatacgaatttgagacatatttt 361  Q
    ||||   |||||||||||| ||||    
T  33430 acatgaaaatttgagacatgtttt 33407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 33851620 - 33851550
Alignment:
Q  292 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatattttt 362  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||||  |||||  ||||||||| |||||||||    
T  33851620 gttacaacaagaaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatattttt 33851550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 21304480 - 21304551
Alignment:
Q  292 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttc 363  Q
    |||||||||| ||||  |||||||| ||| ||||||||||||| |||  || ||||||||| ||||||||||    
T  21304480 gttacaacaaaaaataaagatagaaggattataaaagcataaataaatttaagaatttgagccatatttttc 21304551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 26332654 - 26332609
Alignment:
Q  296 caacaagaaattgagatagaaagatgataaaagcataaacaaacat 341  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||    
T  26332654 caacaagaaatagagaaagaaagttgatcaaagcataaacaaacat 26332609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 341
Target Start/End: Complemental strand, 91827 - 91723
Alignment:
Q  237 tataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaaca 336  Q
    ||||||||| | | ||||||  ||||||| ||||||||| ||||||||| |  | ||| |||| | |||| |||| ||||||||||| ||||||  ||||    
T  91827 tataagataaactagaaaatatgaaaatggtgtgaaaaaagacatactttttttggtttcaaccaaaaatagagaaagaaagatgatcaaagcaccaaca 91728  T
Q  337 aacat 341  Q
    |||||    
T  91727 aacat 91723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University