View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270-Insertion-6 (Length: 170)
Name: NF5270-Insertion-6
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 3e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 16454177 - 16454339
Alignment:
| Q |
8 |
aaagacgagggtgaagctgctgaagtaaagcagaataggctcaagtcaacctggtcctctgacataactctgcagattagtaaaatcaagcataacattt |
107 |
Q |
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| T |
16454177 |
aaagacgagggtgaagctgccgaagtaaaacagaataggctcaagtcaacctggtcctctgacataactctgcagattagtaaaatcaagcataacattt |
16454276 |
T |
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| Q |
108 |
ttgggtcagttcacaatgaatgttgatctctaatataacctaagaataggaattaatctttct |
170 |
Q |
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| T |
16454277 |
ttgggtcagttcacaatgaatgttgatctctaatataacctaagaataggaactaatctttct |
16454339 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 16348793 - 16348696
Alignment:
| Q |
14 |
gagggtgaagctgctgaagtaaagcagaataggctcaagtcaacctggtcctctgacataactctgcagattagtaaaatcaagcataacatttttgg |
111 |
Q |
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| T |
16348793 |
gagggtgaagccactgaaggaaagcagaatatgctcaagtcaacatggtcttttgacataactgaacaccttagtaaaattaagcataacatttttgg |
16348696 |
T |
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