View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270-Insertion-8 (Length: 320)

Name: NF5270-Insertion-8
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270-Insertion-8
NF5270-Insertion-8
[»] chr2 (4 HSPs)
chr2 (162-320)||(14645672-14645830)
chr2 (23-169)||(14662087-14662233)
chr2 (165-313)||(14661904-14662052)
chr2 (23-169)||(14645862-14646008)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 14645830 - 14645672
Alignment:
Q  162 tcgttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagcttacaccaaatgctgtttcagaggc 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14645830 tcgttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagtaaagcttacaccaaatgctgtttcagaggc 14645731  T
Q  262 atgcgtttgcaaattatttggaccctcagacattggcatttgatataaagcatacagtg 320  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14645730 atgcgtttgcaaattattttgaccctcagacattggcatttgatataaagcatacagtg 14645672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 14662233 - 14662087
Alignment:
Q  23 tcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcatgt 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14662233 tcagacagatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcacgt 14662134  T
Q  123 cattcatgcttctattttttccgtatgcttgagcattgatcgttcct 169  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  14662133 cattcatgcttctattttttccgtatgcttgagcattgatctttcct 14662087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 14662052 - 14661904
Alignment:
Q  165 ttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagcttacaccaaatgctgtttcagaggcatg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  14662052 ttcctcgatcaggcaatacatcagaactggaatttttctgattcagtccaaacttcaaagcatcagcagagctctcaccaaatgcagtttcagaggcatg 14661953  T
Q  265 cgtttgcaaattatttggaccctcagacattggcatttgatataaagca 313  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14661952 tgtttgcaaattattttgaccctcagacattggcatttgatataaagca 14661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 14646008 - 14645862
Alignment:
Q  23 tcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaactcattgtcttcgttggttttgaatccgtagcatgttgattcatgt 122  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| ||    
T  14646008 tcagacacatgtttatcttcgatcatgttgtcaaacctgctagaatgtttagaactcattgtcttcattggttttgaatccgtaggatgttgattcacgt 14645909  T
Q  123 cattcatgcttctattttttccgtatgcttgagcattgatcgttcct 169  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  14645908 cattcatgcttctattttttccggatgcttgagcattgatctttcct 14645862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University