View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270-Insertion-9 (Length: 377)
Name: NF5270-Insertion-9
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 20168913 - 20168550
Alignment:
| Q |
8 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168913 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaa |
20168814 |
T |
|
| Q |
108 |
ttaattaattaaaattagaatcacaacaaaggattgaattgatttttaaattgacaa--------agtttaacactgttaatcctttagagactgattca |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
20168813 |
ttaattaattaaaattagaatcacaacaaaggattgaattgatttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattca |
20168714 |
T |
|
| Q |
200 |
tggtattcttcttcctcacatgaactccatcgtgatccctcatgttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaacca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20168713 |
tggtattcttcttcctcacatgaactccatcgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaacca |
20168614 |
T |
|
| Q |
300 |
ccatggagataagtgttgttatcaagaaaaacgaataagaaattaaatagatttcgatacgatt |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20168613 |
ccatggagataagtgttgttatcaagaaaaacgaataagaaattaaatagattccgatacgatt |
20168550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 28583927 - 28584006
Alignment:
| Q |
85 |
tctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattgatttttaaattgacaa |
164 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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|
| T |
28583927 |
tctttctaaaattgaagaaaaaattaattaattaaaattagaatcacaacaaagggattgaa-tgaattttaaattgacaa |
28584006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 44390622 - 44390259
Alignment:
| Q |
8 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390622 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaa |
44390523 |
T |
|
| Q |
108 |
ttaattaattaaaattagaatcacaacaaaggattgaattgatttttaaattgacaa--------agtttaacactgttaatcctttagagactgattca |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
44390522 |
ttaattaattaaaattagaatcacaacaaaggattgaattgatttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattca |
44390423 |
T |
|
| Q |
200 |
tggtattcttcttcctcacatgaactccatcgtgatccctcatgttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaacca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
44390422 |
tggtattcttcttcctcacatgaactccatcgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaacca |
44390323 |
T |
|
| Q |
300 |
ccatggagataagtgttgttatcaagaaaaacgaataagaaattaaatagatttcgatacgatt |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
44390322 |
ccatggagataagtgttgttatcaagaaaaacgaataagaaattaaatagattccgatacgatt |
44390259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 26582522 - 26582378
Alignment:
| Q |
8 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||| || || ||| || |||||| ||||||||||||||||||||| |||| | ||||||||||||||||||||||| | |
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|
| T |
26582522 |
tcaatttcccaatttcattgcaaa-tccataaca--acttgaacaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacga |
26582426 |
T |
|
| Q |
107 |
attaattaattaaaattagaatcacaacaaa-ggattgaattgatttt |
153 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||| |||||| |
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|
| T |
26582425 |
attaattagataaaattagaatcacaacaaatggattaaatggatttt |
26582378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 38823410 - 38823503
Alignment:
| Q |
44 |
acatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaa |
136 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38823410 |
acatgaacaattttgatgagattaattaattaacactgagagtctttctaaaattgaagaacaaattaattagataaaattagaatcacaacaa |
38823503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 2398086 - 2398007
Alignment:
| Q |
85 |
tctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaattgatttttaaattgacaa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| |
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|
| T |
2398086 |
tctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaagggattgaa-tgaattttaaattgacaa |
2398007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 44095896 - 44095740
Alignment:
| Q |
8 |
tcaatttcccaatttcattgcaaaatctatcacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | | | ||||||||||||||| |||||||||||| | ||||||||||| ||||||| ||| |
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| T |
44095896 |
tcaatttcccaatttcattgcaaaatctataaccacataaaatgattttgatgagattacttaattgaaacatgaaatctttctaaaactgaagaagaaa |
44095797 |
T |
|
| Q |
108 |
ttaattaattaaaattagaatcacaacaaa-ggattgaattgatttttaaattgacaa |
164 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
44095796 |
ttaattaattaaaattgaaattgcaacaaagggattgaa-tgaattttaaattgacaa |
44095740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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