View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270_high_11 (Length: 453)
Name: NF5270_high_11
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 98549 - 98099
Alignment:
| Q |
1 |
ttgaataatttacaaaatgacaacaatgcttcagttgtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtctcctttatgggtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
98549 |
ttgaataatttacaaaatgacaacaatgcttcagtggtgtttcctaatgtgcttgatcttgttgtcatgggttccatttaataagtcttctttatgggtg |
98450 |
T |
|
| Q |
101 |
cccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcccacataac |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
98449 |
cccctaatatggtccctatttttaagggtgcactcgtagtccccttaaaatgaccttcaatagtatattgcaaaaaaaattgtattttgtcccacataac |
98350 |
T |
|
| Q |
201 |
nnnnnnnnnngtaagttgaataattacttttacgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98349 |
aaaaaaaaa-gtaagttgaataattacttttacgccctttgatgtaagccataaattctaagtgtagaacataaccattttcttcatctcgttctcaatc |
98251 |
T |
|
| Q |
301 |
ttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98250 |
ttcattgcccagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcaccaatcacga |
98151 |
T |
|
| Q |
401 |
cacgctactccatttaaccaatataatatatgaatttcttgttgtacctttg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
98150 |
cacgctactccatttaaccaatataatatatgaatttcttgttgtacctttg |
98099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 50638856 - 50638791
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
161 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
50638856 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
50638791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 50637966 - 50638024
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
154 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
50637966 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
50638024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 97621 - 97654
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
97621 |
gggtgcccctaatatggtccctatttttaagggt |
97654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 24975424 - 24975388
Alignment:
| Q |
326 |
cttccactctctccgtgttaattgccaaactcatggc |
362 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24975424 |
cttccactctctctatgttaattgccaaactcatggc |
24975388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 93 - 452
Target Start/End: Original strand, 40828778 - 40829144
Alignment:
| Q |
93 |
tatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnnttgtattttgtcc |
192 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40828778 |
tatgggtgcatctaatatggtccctatttttaagggtgcattcag-gtccccttaaaatgaccttcaatagtagattgaaaaaaaaattgtattttgtcc |
40828876 |
T |
|
| Q |
193 |
cacataacnnnnnnnnnngtaagttgaataattacttttacgccctttgatgtaagccataaattct-aagtgtagaacataaccattttcttcatctcg |
291 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | | |||||||||||| ||||||||||||| ||||| |
|
|
| T |
40828877 |
cacataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaatttcaagtgtagaacaaaaccattttcttcctctcg |
40828976 |
T |
|
| Q |
292 |
ttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcac |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40828977 |
ttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcaccttcac |
40829076 |
T |
|
| Q |
392 |
caatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
452 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40829077 |
caatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
40829144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 40829630 - 40829563
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
163 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
40829630 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
40829563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 92 - 452
Target Start/End: Original strand, 24948394 - 24948765
Alignment:
| Q |
92 |
ttatgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgt |
190 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24948394 |
ttatgggtgcttctaatatggtccctatttttaagggtgcattcatggtccccttaaaatgaccttcaatagtagattgcaaaaaaaaattgtattttgt |
24948493 |
T |
|
| Q |
191 |
cccacataacnnnnnnnnnn--gtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcat |
287 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||| | ||||||||||||| | |
|
|
| T |
24948494 |
cccacataacaaaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaaaagaaccattttcttcct |
24948593 |
T |
|
| Q |
288 |
ctcgttctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcacct |
387 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24948594 |
ctcgttctcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggctacttcttctatcaaatactcacct |
24948693 |
T |
|
| Q |
388 |
tcaccaatcacgacacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
452 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24948694 |
tcaccaatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
24948765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 24949252 - 24949185
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
163 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
24949252 |
gggtggccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
24949185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 95 - 452
Target Start/End: Complemental strand, 11744917 - 11744551
Alignment:
| Q |
95 |
tgggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatagtagattgcnnnnnnnn-ttgtattttgtccc |
193 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
11744917 |
tgggtgcttctaatatggtccctatttttaagggtgtattcatggtccccttaaaatgaccttcaacagtagattgcaaaaaaaaattgtattttgtccc |
11744818 |
T |
|
| Q |
194 |
acataacnnnnnnnnnngtaagttgaataattacttttacgccctttgatgtaagccataaa-ttctaagtgtagaacataaccattttcttcatctcgt |
292 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
11744817 |
acataacaaaaaaaaaagtaagttgagtaattacttttacgccctttgatgtaagccttaaaattccaagtgtagaacagaaccattttcttcctctcgc |
11744718 |
T |
|
| Q |
293 |
tctcaatcttcattgcccagaagcattttcttccttccactctctccgtgttaattgccaaactcatggctacttcttctatcaaatattcaccttcacc |
392 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11744717 |
tttcaatcttcattgcctagaagcattttcttccttccactctctctgtgttaattgccaaactcatggttacttcttctatcaaatactcaccttcacc |
11744618 |
T |
|
| Q |
393 |
aatcacgacacgctactccattt-------aaccaatataatatatgaatttcttgttgtacctttg |
452 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11744617 |
aatcaccacacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
11744551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 11744065 - 11744132
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaatag |
163 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||||| |
|
|
| T |
11744065 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtccctttaaaataaccttcaatag |
11744132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 16798290 - 16798225
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgaccttcaat |
161 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
16798290 |
gggtgcccctaatatggtccctatttttaagggtgcacccatggtcccttcaaaatgaccttcaat |
16798225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 16797400 - 16797458
Alignment:
| Q |
96 |
gggtgcccctaatatggtccctattttcaagggtgcactcatagtccccttaaaatgac |
154 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
16797400 |
gggtgcctctaacatggtccctatttttaagggtgcactcatggtccctttaaaatgac |
16797458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University