View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_high_12 (Length: 442)
Name: NF5270_high_12
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 5 - 442
Target Start/End: Original strand, 34822542 - 34822979
Alignment:
| Q |
5 |
cagcagtcgaatacgagttaaattgatcaagatcatgctttgtgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34822542 |
cagcagtcgaatacgagttaaattgatcaagatcatgctttatgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg |
34822641 |
T |
|
| Q |
105 |
acaaggaagtaaaatcgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca |
204 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34822642 |
acaaggaagtaaaattgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca |
34822741 |
T |
|
| Q |
205 |
ataatagcggtacaatataatctggacagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacagttgtgcta |
304 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34822742 |
ataatagcggtacaatatattctggagagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacacttgtgcta |
34822841 |
T |
|
| Q |
305 |
atgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtctctcg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34822842 |
atgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtctctcg |
34822941 |
T |
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| Q |
405 |
gctttttgtctcatggaatcaataatctcttccgtttc |
442 |
Q |
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| T |
34822942 |
gctttttgtttcatggaatcaataatctcttccgtttc |
34822979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 34825999 - 34826048
Alignment:
| Q |
393 |
cggagtctctcggctttttgtctcatggaatcaataatctcttccgtttc |
442 |
Q |
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| T |
34825999 |
cggagtctctcagctttttgtctcattgaatcaataatatcttccgtttc |
34826048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 42233486 - 42233047
Alignment:
| Q |
5 |
cagcagtcgaatacgagttaaattgatcaagatcatgctttgtgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg |
104 |
Q |
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||||||| |||| | ||||||||||||| ||| |||||||| |||||||||| || || |||| | |||||||| ||| ||| |||||||||||||||| |
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| T |
42233486 |
cagcagttgaattcaagttaaattgatcgagaccatgctttatgttagtgtacactcgtaataat-acaaactaaaaagtgaaccaaacttgtaacacca |
42233388 |
T |
|
| Q |
105 |
acaaggaagtaaaatcgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca |
204 |
Q |
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||||||| ||||||| || |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42233387 |
acaaggatgtaaaattgttattgacaaggagaatcagcattgaaagatgtaagggagaaaacaatagtttctgtaaatttcagttacttcactaaaagca |
42233288 |
T |
|
| Q |
205 |
ataatagcggtacaa----tataatctggacagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacagttgt |
300 |
Q |
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||||||| ||||||| |||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||| || |||||| | || |
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| T |
42233287 |
ataatagaggtacaaacaatatattctggagagagtaacaaaagagtgctaactaaaaagtcattcagttaacaaaatctaactatctgacaacattggt |
42233188 |
T |
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| Q |
301 |
gctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtct |
400 |
Q |
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| T |
42233187 |
gctaatgctg-aaataactatcagttaactacatatactagcattcagtggcagttccagcttgctgattctgatacattatgacgtactcgcggagtcc |
42233089 |
T |
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| Q |
401 |
ctcggctttttgtctcatggaatcaataatctcttccgtttc |
442 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
42233088 |
ctcggctttttgtctcatggaatcaatgatctctttcgtttc |
42233047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 172 - 442
Target Start/End: Original strand, 28945346 - 28945616
Alignment:
| Q |
172 |
tttctgtaaatttgagttacttcactaaaagcaataatagcggtacaatataatctggacagagtaacaaaagagtgctgactaaaaactcattcagtta |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28945346 |
tttctgtaaatttgagttacttcactaaaagcaataatagcggtacaatatattatggagagagtaacaaaagagtgctgactaaaaactcattcagtta |
28945445 |
T |
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| Q |
272 |
acaaattctaactacctaacaacagttgtgctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattc |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28945446 |
acaaattctaactacctaacaacagttgtgctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattc |
28945545 |
T |
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| Q |
372 |
tgatacattatgacgtactcgcggagtctctcggctttttgtctcatggaatcaataatctcttccgtttc |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28945546 |
tgatacattatgacgtactcgcggagtctctcggctttttgtgtcatggaatcaataatctcttccgtttc |
28945616 |
T |
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