View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_high_18 (Length: 379)
Name: NF5270_high_18
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 152 - 379
Target Start/End: Original strand, 33116549 - 33116776
Alignment:
| Q |
152 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaactttgcatgatagctaatcaagagtattatatatgcagctg |
251 |
Q |
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| T |
33116549 |
acaaggtaaatatgcaatcttcctctttccataggccatttttaactcatttccataaaatttgcatgatagctaatcaagagtattatatatgcagctg |
33116648 |
T |
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| Q |
252 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
351 |
Q |
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| T |
33116649 |
ttaccaggtgcatgcttgatctcaaatgacatgacaaagaaccaatgtcaaaaaggacacagatcatggtatacacaaggatgtcctagcaaattgggtt |
33116748 |
T |
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| Q |
352 |
ggcttgcactgatcggattggctctcta |
379 |
Q |
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| T |
33116749 |
ggcttgcactgattggattggctctcta |
33116776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33116450 - 33116552
Alignment:
| Q |
1 |
caaaccgaaactcattccccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgca |
100 |
Q |
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| T |
33116450 |
caaaccgaaactcattctccaatgataagtgaaatagaaacttatcatttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgca |
33116549 |
T |
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| Q |
101 |
caa |
103 |
Q |
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| T |
33116550 |
caa |
33116552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 1083962 - 1083768
Alignment:
| Q |
1 |
caaaccgaaactcattccccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgca |
100 |
Q |
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| T |
1083962 |
caaaccgaaactcattctccaatgataagtgaaatagaaacttatcgtttcaacaacacctgtcctgcttttactccttctcgtggcggatgggactgca |
1083863 |
T |
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| Q |
101 |
caacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
195 |
Q |
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| T |
1083862 |
caacgtgtttaaaggcttcaccaaaatgtggattttgtgcatctgactctaacaaggtaaatatgcaatcttcctctttccataggccattttta |
1083768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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