View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_high_25 (Length: 319)
Name: NF5270_high_25
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_25 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 1313775 - 1313480
Alignment:
| Q |
19 |
ggtatagtgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgctt |
118 |
Q |
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| T |
1313775 |
ggtatagtgcttgcaattttttgggcatagaccttctagttcccagggaaaaggagctattgtaatctggttcgcactttgaaacattgctatagtgctt |
1313676 |
T |
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| Q |
119 |
ggtgttgttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttg |
218 |
Q |
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| T |
1313675 |
ggtgttgttttaagcattgatgctaacatgatttgttcaggagagttcgtccgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttg |
1313576 |
T |
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| Q |
219 |
aaaaagaaggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
314 |
Q |
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| T |
1313575 |
aaaaagaaggaggtaaactcttgccaggttgatctggagaagcagctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
1313480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 1294757 - 1294469
Alignment:
| Q |
26 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttg |
125 |
Q |
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| T |
1294757 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttg |
1294658 |
T |
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| Q |
126 |
ttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaaga |
225 |
Q |
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| T |
1294657 |
ttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaaga |
1294558 |
T |
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| Q |
226 |
aggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
314 |
Q |
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| T |
1294557 |
aggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
1294469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 22667 - 22379
Alignment:
| Q |
26 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatctggttcacactttgaaacattgctatagtgcttggtgttg |
125 |
Q |
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| T |
22667 |
tgcttgcaattttttgggcataaaccttctagttcctagggaaaaggagctattgtaatgtggttcgcactttgaaacattgctatagtgcttggtgttg |
22568 |
T |
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| Q |
126 |
ttttaagcattgatgctaacatgatttgttcaggagagtttgtctgttagcacttcaaaagaaacacaggatagttctgcttctacaaggttgaaaaaga |
225 |
Q |
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| T |
22567 |
ttttaagcattgatgttaacatggtttgttcaggagagttcgtccattagcacttcaaaagaaacacaggatagttctgcttctactaggtcgaaaaaga |
22468 |
T |
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| Q |
226 |
aggaggtaaactcttgccaggttgatctggagaagccgctagggaaatttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
314 |
Q |
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| T |
22467 |
aggaggtaaactcttgccaggttgatctggagaagccactagggaattttacgggaaaaccattgtatccacccgtgggaaagtctgtg |
22379 |
T |
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