View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270_high_31 (Length: 275)
Name: NF5270_high_31
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 47058714 - 47058465
Alignment:
| Q |
9 |
aataattctacctttaataacttcagctacagggtaatttagtttgcaataaaaacttttatggaatgcttgatcattgtaattgtaaaagtttaatcaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47058714 |
aataattctacctttaataacttcagctacagggtaatttagtttgcaataaaaacttttatggaatgcttgatcattgtaattgtaaaagtttaatcaa |
47058615 |
T |
|
| Q |
109 |
atcagtctcttcattggtatttggagggacataattggataataagttagtaatattgaatatgaatttgaaactaagtgaacaatgtacgagatgtata |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47058614 |
atcagtctcttcattggtatttggagggacataattggataataagttagtaatattgaatatgaatttgaaactaagtgaacaatgtacgagatgtata |
47058515 |
T |
|
| Q |
209 |
tgataatagatcctaacagagggacggacttgattaacgttgtgtagtgt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
47058514 |
tgataatagatcctaacagagggacggacttgattaacattgtgtcgtgt |
47058465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 3457946 - 3458019
Alignment:
| Q |
146 |
gataataagttagtaatattgaatatgaatttgaaactaagtgaacaatgtacgagatgtatatgataatagat |
219 |
Q |
| |
|
|||| |||||| ||||||| ||| |||||||||||| |||||||| ||||| |||||| || ||||| ||||| |
|
|
| T |
3457946 |
gatattaagttggtaatatcgaagatgaatttgaaattaagtgaataatgtcagagatgcatttgatattagat |
3458019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University