View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_high_49 (Length: 237)
Name: NF5270_high_49
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_49 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 1084171 - 1083950
Alignment:
| Q |
16 |
taatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1084171 |
taatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatacgtttgg |
1084072 |
T |
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| Q |
116 |
ttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtc |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1084071 |
ttcgcttataagcatatatttcattgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtc |
1083972 |
T |
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| Q |
216 |
actttccgacaaaccgaaactc |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
1083971 |
actttccgacaaaccgaaactc |
1083950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 33116241 - 33116462
Alignment:
| Q |
16 |
taatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116241 |
taatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttgg |
33116340 |
T |
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| Q |
116 |
ttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtc |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116341 |
ttctcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtttgtttggagttgtcttatcacttgtgcttcttactgtc |
33116440 |
T |
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| Q |
216 |
actttccgacaaaccgaaactc |
237 |
Q |
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|||||| ||||||||||||||| |
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| T |
33116441 |
actttctgacaaaccgaaactc |
33116462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 21559294 - 21559150
Alignment:
| Q |
16 |
taatgtacttcagcccaactattgttcaactagctggttttgcatctaatcaaaccgcaatgcttctgtctcttatcactgctgggttgaatgcgtttgg |
115 |
Q |
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||||||||| ||| ||||| || ||||||||||||||||||||||| || |||| ||| | |||||||| || |||| ||||| | ||||| ||||| |
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| T |
21559294 |
taatgtactacagtccaaccatcgttcaactagctggttttgcatcaaacaaaacagcacttcttctgtcgctcgtcacagctggaattaatgcatttgg |
21559195 |
T |
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| Q |
116 |
ttcgcttataagcatatatttcatcgataaaaccgggagaaagaa |
160 |
Q |
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|||| || | |||||||| || ||||| || ||||| || ||||| |
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| T |
21559194 |
ttcgattttgagcatatactttatcgacaagaccggaaggaagaa |
21559150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 21492547 - 21492446
Alignment:
| Q |
78 |
cttctgtctcttatcactgctgggttgaatgcgtttggttcgcttataagcatatatttcatcgataaaaccgggagaaagaagctagctttgattagtt |
177 |
Q |
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||||||||||| |||||| |||| | ||||| || ||||| || | ||||||||||||||||| ||||| ||||| ||||| || || |||||||||| |
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| T |
21492547 |
cttctgtctctaatcacttctggcctcaatgcattcggttcaattctgagcatatatttcatcgacaaaactgggaggaagaaacttgcattgattagtt |
21492448 |
T |
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| Q |
178 |
tg |
179 |
Q |
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|| |
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| T |
21492447 |
tg |
21492446 |
T |
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