View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_high_57 (Length: 223)
Name: NF5270_high_57
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_57 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42232709 - 42232487
Alignment:
| Q |
1 |
acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
42232709 |
acacactcttcctccaatttctccgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctcttcccgcaatttcctcttcccct |
42232610 |
T |
|
| Q |
101 |
tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42232609 |
tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt |
42232510 |
T |
|
| Q |
201 |
tatcctcacattcctcggctcct |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
42232509 |
catcctcacattcctcggctcct |
42232487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Complemental strand, 42232929 - 42232899
Alignment:
| Q |
42 |
acaattctctttaccatctccatcaccaaca |
72 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42232929 |
acaattctctttaccatctccatcaccaaca |
42232899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28945942 - 28946164
Alignment:
| Q |
1 |
acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct |
100 |
Q |
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||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||| |
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| T |
28945942 |
acacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccct |
28946041 |
T |
|
| Q |
101 |
tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt |
200 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
28946042 |
tagcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgt |
28946141 |
T |
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| Q |
201 |
tatcctcacattcctcggctcct |
223 |
Q |
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||||||||| |||||||||||| |
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| T |
28946142 |
catcctcacactcctcggctcct |
28946164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34823305 - 34823527
Alignment:
| Q |
1 |
acacactcttcctccaatttctctgtttcttgagcatcatgacaattctctttaccatctccatcaccaacaatctctcccagcaatttcctcttcccct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||||||| |
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| T |
34823305 |
acacactcttcctccaatttctccttttcttcagcatcatcacaattctctttaccatctccatcaccaacaatttcttcccgcaacttcctcttcccct |
34823404 |
T |
|
| Q |
101 |
tagcaccacccctcgttttcttattctcaacattctccactccatcccccaagctcaaatcttccccaatcacaacccctttattcttcatgttccttgt |
200 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
34823405 |
tagcacaacccctcgttttctttttctcaacattctccactccatccaccaagctcaaatcttccccaattacaacccctttattcttcacattccttgt |
34823504 |
T |
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| Q |
201 |
tatcctcacattcctcggctcct |
223 |
Q |
| |
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||||||||| |||||||||||| |
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|
| T |
34823505 |
catcctcacactcctcggctcct |
34823527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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