View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_high_59 (Length: 219)

Name: NF5270_high_59
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_high_59
NF5270_high_59
[»] chr4 (1 HSPs)
chr4 (137-206)||(45266062-45266131)
[»] chr1 (1 HSPs)
chr1 (137-206)||(47861408-47861477)
[»] chr5 (2 HSPs)
chr5 (137-200)||(38256117-38256180)
chr5 (43-80)||(38256023-38256060)
[»] chr3 (1 HSPs)
chr3 (43-79)||(52421861-52421897)


Alignment Details
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 45266062 - 45266131
Alignment:
Q  137 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttgaattccatattctt 206  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  45266062 ggtgatagagaaagctcagcgactccttcttctacaagagttggtggaacctcttgagttccattttctt 45266131  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 47861477 - 47861408
Alignment:
Q  137 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttgaattccatattctt 206  Q
    |||||||||||||| | || ||||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  47861477 ggtgatagagaaagcttagcgactccttcttctacaagagttggtggaacctcttgagttccattttctt 47861408  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 38256117 - 38256180
Alignment:
Q  137 ggtgatagagaaagatcagtgactccttcttttacaagagttggtggaacctcttgaattccat 200  Q
    ||||||| |||||| |||  |||||||| |||||||||||||||||||||||||||||||||||    
T  38256117 ggtgataaagaaagctcaacgactccttattttacaagagttggtggaacctcttgaattccat 38256180  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 38256023 - 38256060
Alignment:
Q  43 tgaactggttttcaaaatagttaactgttttgattaat 80  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38256023 tgaactggttttcaaaatagttaacttttttgattaat 38256060  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 52421861 - 52421897
Alignment:
Q  43 tgaactggttttcaaaatagttaactgttttgattaa 79  Q
    |||||||||||||||||||||||||||||||||||||    
T  52421861 tgaactggttttcaaaatagttaactgttttgattaa 52421897  T

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