View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5270_high_8 (Length: 496)
Name: NF5270_high_8
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 41516310 - 41516699
Alignment:
| Q |
8 |
cgaagaatataaggaagagatagaaatataggaatgtgaagttttgacacaaagcacatttgtctttgttcatttcttatcttac----tactacataaa |
103 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41516310 |
cgaagaaaataaagaagagatagaaatataggaatgtgaagttttgacacaaa-cacatttgtctttgttcatttcttatcttaaatcttactacataaa |
41516408 |
T |
|
| Q |
104 |
atatctaacagaaacaaagacacaaaaaacacatatgaacatgttggcaagcacaagcaacagcggcaccgctttaggtggatggacggtgttacaagta |
203 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41516409 |
-tatctaaaagaaacaaagacacaaaaaacacatatgaacatgttggcaagcacaagcaacagcagcaccgctttaggtggatggacggtgttacaagta |
41516507 |
T |
|
| Q |
204 |
tccaaaatcagaaacaaccgttctgtttcatcttccttttctcttcggatctctgccacctgcgacgaccgtcctcatggtccatcttgtatatatgttg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41516508 |
tccaaaatcagaaacaaccgttctgtttcatcttccttctctcttcgtatctgtgccacctgcgacgaccgtcctcatggtccatcttgtatatatgttg |
41516607 |
T |
|
| Q |
304 |
gtcctcttcaaactgccacccaagaaacccttgaagctctttattctcaagtaacttcttttttcacttttatgaggttgtttaaggtttat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41516608 |
gtcctcttcaaactgccacccaagaaacccttgaagctctttattctcaagtaacttcttttttcacttttatgaggttgtttaaggtttat |
41516699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 395 - 478
Target Start/End: Original strand, 41516723 - 41516807
Alignment:
| Q |
395 |
tcgattgacttatttactaacataagcttcgtgagagactgtttaaaactgtc-tgtctttcagtctatttttgtaagttatcca |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41516723 |
tcgattgacttatttactaacataagcttcgtgagagactgtttaaaactgtcttgtctttcagtctatttttgtaagttatcca |
41516807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University