View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_10 (Length: 457)
Name: NF5270_low_10
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_10 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 64 - 438
Target Start/End: Complemental strand, 20565 - 20185
Alignment:
| Q |
64 |
agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctc--------acctt |
155 |
Q |
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| T |
20565 |
agattctgaaaatatttctattctcaaatttcacccatcatagattcaaagttaagccaagactatatcaattctaaaggtcctctcttgttctcacctt |
20466 |
T |
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| Q |
156 |
ttcttcaaataacattagacccatttcgatcaaatgtcattttgttctatataaaatgtaaaatttacattggaagtacaaaagtaaatgatgttgacac |
255 |
Q |
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| T |
20465 |
ttcgtcaagtaacattacacccatttcgatcaaatgt--ttgcattctatataaaatgcaaaattcacattggaagtacaaaaataaaagatgttgacac |
20368 |
T |
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| Q |
256 |
caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatgtctccatgataca |
355 |
Q |
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| T |
20367 |
caccaaaaaatatgaaccgatctaatcaacatcctctattatcatgcttcatgattcctgtacaacaatcaaacacaacattcaatctctccatgataca |
20268 |
T |
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| Q |
356 |
aatatccatagtccaacgttactaatttgatgagacctatgaaatgattgttcattcaatacataaaaagatacggttagaaa |
438 |
Q |
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| T |
20267 |
aatatccatagtccaatgttactaatttgatgagacctatgaaatgattgttcattcaatacatgcaaagatacggttagaaa |
20185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 10440297 - 10440399
Alignment:
| Q |
64 |
agattctgaaaatatttctattctcaaatttcatccatcataaattcaaagttaagacaagactatatcaattctaaaggtcctctcaccttttcttcaa |
163 |
Q |
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| T |
10440297 |
agattctaaaaatatttctattctcaaatttcacccatcatagattcaaaattaagccaagactatatcaattctaaaggtcctctcaccttttcttcaa |
10440396 |
T |
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| Q |
164 |
ata |
166 |
Q |
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||| |
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| T |
10440397 |
ata |
10440399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 10440426 - 10440466
Alignment:
| Q |
259 |
caaaaaatatgaaccgatctaatcaacatcctctattatca |
299 |
Q |
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| T |
10440426 |
caaaaaatatgaaccgatctaatcaacatcctctattatca |
10440466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 10440542 - 10440586
Alignment:
| Q |
394 |
atgaaatgattgttcattcaatacataaaaagatacggttagaaa |
438 |
Q |
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| T |
10440542 |
atgaaatgattgttcattcaatacatgaaaagatacggttagaaa |
10440586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 10440501 - 10440544
Alignment:
| Q |
297 |
tcatgcttcatgattcctgtacaacaatcaaacacaacattcaatg |
342 |
Q |
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| T |
10440501 |
tcatgcttcatgattcctgtacaacaatcaa--acaacattcaatg |
10440544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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