View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5270_low_12 (Length: 442)

Name: NF5270_low_12
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5270_low_12
NF5270_low_12
[»] chr4 (2 HSPs)
chr4 (5-442)||(34822542-34822979)
chr4 (393-442)||(34825999-34826048)
[»] chr3 (1 HSPs)
chr3 (5-442)||(42233047-42233486)
[»] chr8 (1 HSPs)
chr8 (172-442)||(28945346-28945616)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 5 - 442
Target Start/End: Original strand, 34822542 - 34822979
Alignment:
Q  5 cagcagtcgaatacgagttaaattgatcaagatcatgctttgtgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg 104  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34822542 cagcagtcgaatacgagttaaattgatcaagatcatgctttatgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg 34822641  T
Q  105 acaaggaagtaaaatcgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34822642 acaaggaagtaaaattgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca 34822741  T
Q  205 ataatagcggtacaatataatctggacagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacagttgtgcta 304  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34822742 ataatagcggtacaatatattctggagagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacacttgtgcta 34822841  T
Q  305 atgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtctctcg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34822842 atgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtctctcg 34822941  T
Q  405 gctttttgtctcatggaatcaataatctcttccgtttc 442  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  34822942 gctttttgtttcatggaatcaataatctcttccgtttc 34822979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 34825999 - 34826048
Alignment:
Q  393 cggagtctctcggctttttgtctcatggaatcaataatctcttccgtttc 442  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  34825999 cggagtctctcagctttttgtctcattgaatcaataatatcttccgtttc 34826048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 5 - 442
Target Start/End: Complemental strand, 42233486 - 42233047
Alignment:
Q  5 cagcagtcgaatacgagttaaattgatcaagatcatgctttgtgttagtgtatacacgcaatatttacaaactataaactgagccaaacttgtaacaccg 104  Q
    ||||||| |||| | ||||||||||||| ||| |||||||| |||||||||| || || |||| | |||||||| ||| ||| ||||||||||||||||     
T  42233486 cagcagttgaattcaagttaaattgatcgagaccatgctttatgttagtgtacactcgtaataat-acaaactaaaaagtgaaccaaacttgtaacacca 42233388  T
Q  105 acaaggaagtaaaatcgtcattgacaaggagaatccacattgaaagatccaaaggagaaaacaatagtttctgtaaatttgagttacttcactaaaagca 204  Q
    ||||||| ||||||| || ||||||||||||||||  |||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||||||    
T  42233387 acaaggatgtaaaattgttattgacaaggagaatcagcattgaaagatgtaagggagaaaacaatagtttctgtaaatttcagttacttcactaaaagca 42233288  T
Q  205 ataatagcggtacaa----tataatctggacagagtaacaaaagagtgctgactaaaaactcattcagttaacaaattctaactacctaacaacagttgt 300  Q
    ||||||| |||||||    |||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||| || |||||| | ||    
T  42233287 ataatagaggtacaaacaatatattctggagagagtaacaaaagagtgctaactaaaaagtcattcagttaacaaaatctaactatctgacaacattggt 42233188  T
Q  301 gctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattctgatacattatgacgtactcgcggagtct 400  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  42233187 gctaatgctg-aaataactatcagttaactacatatactagcattcagtggcagttccagcttgctgattctgatacattatgacgtactcgcggagtcc 42233089  T
Q  401 ctcggctttttgtctcatggaatcaataatctcttccgtttc 442  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  42233088 ctcggctttttgtctcatggaatcaatgatctctttcgtttc 42233047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 172 - 442
Target Start/End: Original strand, 28945346 - 28945616
Alignment:
Q  172 tttctgtaaatttgagttacttcactaaaagcaataatagcggtacaatataatctggacagagtaacaaaagagtgctgactaaaaactcattcagtta 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||    
T  28945346 tttctgtaaatttgagttacttcactaaaagcaataatagcggtacaatatattatggagagagtaacaaaagagtgctgactaaaaactcattcagtta 28945445  T
Q  272 acaaattctaactacctaacaacagttgtgctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattc 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28945446 acaaattctaactacctaacaacagttgtgctaatgcttcaaataactatcagttaactacatatactagcattcagtggcagttccagctttctgattc 28945545  T
Q  372 tgatacattatgacgtactcgcggagtctctcggctttttgtctcatggaatcaataatctcttccgtttc 442  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28945546 tgatacattatgacgtactcgcggagtctctcggctttttgtgtcatggaatcaataatctcttccgtttc 28945616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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