View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5270_low_13 (Length: 427)
Name: NF5270_low_13
Description: NF5270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5270_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 48652850 - 48653241
Alignment:
| Q |
13 |
aatattagggtatccccgattctaatttttatgtttactagtatttgctttttggatagactttatattgatttgtagagcgacttttacggtagagaaa |
112 |
Q |
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| T |
48652850 |
aatattagggtatccc-gattctaattttcatgtttactagtatttgctttttggatagactttatattgatttgtagagcgacttttacggtagagaaa |
48652948 |
T |
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| Q |
113 |
tatcttatataatatatgtggaccagtttttgaattgattgatatagtttctcttaattagaagttcataatattattattatcctttacgactcagatg |
212 |
Q |
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| T |
48652949 |
tatcttatataatatatgtggaccagtttttgaattgattgatatagtttctcttaattagaagttcataatattattattatcctttacgactcagatg |
48653048 |
T |
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| Q |
213 |
gtagctcaattggtatcggtctggcaaaaatatacatgaaaaacgaatgtgaatgctccaaaactcaatttatctatttcttttttgttataattaagaa |
312 |
Q |
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| T |
48653049 |
gtagctcaattggtatcggtctggcaaaaatatacatgaaaaacgaatgtgaatgctccaaaactcaatttatctatttcttttttgttataattaagaa |
48653148 |
T |
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| Q |
313 |
cgtggggaagacggtaaacttctacttaaagttgacagtgttatacttatactgtagtttgtttttagtgattttgagatatacttgaagtagctagct |
411 |
Q |
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| T |
48653149 |
cgtggggaagacggtaaacttctacttaaagttgacagtg------tcatactatagtttgtttttagtgattttgagatatacttgaagtagctagct |
48653241 |
T |
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